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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085437 through 18771 annotations produced 2 hits



CG2967 (CG34408):

Annotation Number : CG2967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085437
Gbrowse : chrX:10114142-10123948 (+) // 100.0 //
Probeset : 1641461_at
Accessions : protein= NP_001096938; /// NP_001138183; /// NP_001138184; /// NP_572613;, nucleotide= NM_001103468; /// NM_001144711; /// NM_001144712; /// NM_132385;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0085437.
VDRC has 2 RNAi stocks for FBgn0085437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain251 ± 14 of 4 2.60Up
Head145 ± 64 of 4 1.50Up
Eye138 ± 54 of 4 1.43Up
Thoracicoabdominal ganglion220 ± 54 of 4 2.30Up
Salivary gland218 ± 114 of 4 2.25Up
Crop131 ± 54 of 4 1.40Up
Midgut98 ± 54 of 4 1.00None
Tubule132 ± 84 of 4 1.40Up
Hindgut133 ± 54 of 4 1.40Up
Heart301 ± 114 of 4 3.11Up
Fat body180 ± 14 of 4 1.86Up
Ovary139 ± 14 of 4 1.40Up
Testis19 ± 14 of 4 0.20Down
Male accessory glands231 ± 124 of 4 2.40Up
Virgin spermatheca142 ± 104 of 4 1.47Up
Mated spermatheca127 ± 64 of 4 1.32Up
Adult carcass128 ± 54 of 4 1.30Up
Larval CNS132 ± 94 of 4 1.37Up
Larval Salivary gland330 ± 294 of 4 3.40Up
Larval midgut103 ± 34 of 4 1.06None
Larval tubule117 ± 84 of 4 1.20None
Larval hindgut153 ± 34 of 4 1.58Up
Larval fat body101 ± 84 of 4 1.00None
Larval trachea157 ± 144 of 4 1.62Up
Larval carcass164 ± 24 of 4 1.69Up
S2 cells (growing)112 ± 24 of 4 1.16Up
Whole fly97 ± 14 of 4



CG2967 (CG34408):

Annotation Number : CG32689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085437
Gbrowse : chrX:10116930-10117598 (+) // 100.0 //
Probeset : 1637553_at
Accessions : protein= NP_001096938; /// NP_001138183; /// NP_001138184; /// NP_572613;, nucleotide= NM_001103468; /// NM_001144711; /// NM_001144712; /// NM_132385;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0085437.
VDRC has 2 RNAi stocks for FBgn0085437 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 6.80Up
Head1 ± 00 of 4 3.10None
Eye1 ± 00 of 4 4.00None
Thoracicoabdominal ganglion1 ± 00 of 4 2.50None
Salivary gland1 ± 00 of 4 4.18None
Crop0 ± 00 of 4 1.60None
Midgut0 ± 00 of 4 1.90Up
Tubule2 ± 00 of 4 6.30Up
Hindgut1 ± 00 of 4 2.40None
Heart3 ± 10 of 4 8.94None
Fat body2 ± 10 of 4 4.65None
Ovary0 ± 00 of 4 2.10None
Testis0 ± 00 of 4 1.90None
Male accessory glands1 ± 00 of 4 2.60None
Virgin spermatheca0 ± 00 of 4 1.88None
Mated spermatheca1 ± 00 of 4 2.53None
Adult carcass1 ± 00 of 4 2.20None
Larval CNS1 ± 10 of 4 3.06None
Larval Salivary gland1 ± 00 of 4 2.65None
Larval midgut1 ± 00 of 4 4.00None
Larval tubule3 ± 10 of 4 7.40None
Larval hindgut1 ± 00 of 4 3.88None
Larval fat body0 ± 00 of 4 2.00None
Larval trachea2 ± 20 of 4 5.35None
Larval carcass1 ± 00 of 4 2.59None
S2 cells (growing)1 ± 00 of 4 3.82None
Whole fly0 ± 00 of 4

Looking for FBgn0085437. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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