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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085440 through 18771 annotations produced 2 hits



CG32637 (CG34411):

Annotation Number : CG4187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085440
Gbrowse : chrX:13055950-13057524 (-) // 100.0 //
Probeset : 1635672_at
Accessions : protein= NP_001096966;, nucleotide= NM_001103496;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0085440.
Homophila reports that CG4187 is a close match (4e-16) to human gene FSHR;ODG1 (NP_000136), a gene associated with Ovarian dysgenesis 1, 233300 (3);Ovarian hyperstimulation syndrome, 608115 (3);Ovarian response to FSH stimulation, 276400 (3);Ovarian sex cord tumors (3).
TRiP has 1 RNAi stocks for FBgn0085440 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 9.30Up
Head6 11 of 4 3.20None
Eye1 00 of 4 0.62None
Thoracicoabdominal ganglion32 34 of 415.30Up
Salivary gland10 40 of 4 4.80None
Crop33 04 of 415.50Up
Midgut14 22 of 4 6.70Up
Tubule2 00 of 4 0.90None
Hindgut8 21 of 4 4.00Up
Heart4 10 of 4 1.95None
Fat body3 51 of 4 1.74None
Ovary0 00 of 4 0.30None
Testis2 00 of 4 1.00None
Male accessory glands0 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.44None
Mated spermatheca1 00 of 4 0.44None
Adult carcass11 11 of 4 5.40Up
Larval CNS7 12 of 4 3.27Up
Larval Salivary gland4 10 of 4 1.85None
Larval midgut6 20 of 4 3.17None
Larval tubule4 20 of 4 1.90None
Larval hindgut1 00 of 4 0.87None
Larval fat body6 30 of 4 2.80None
Larval trachea0 00 of 4 0.23None
Larval carcass1 00 of 4 0.50None
S2 cells (growing)1 00 of 4 0.80None
Whole fly2 00 of 4



CG32637 (CG34411):

Annotation Number : CG32637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085440
Gbrowse : chrX:13066535-13068144 (-) // 100.0 //
Probeset : 1638557_at
Accessions : protein= NP_001096966;, nucleotide= NM_001103496;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0085440.
TRiP has 1 RNAi stocks for FBgn0085440 available for purchase.
VDRC has 3 RNAi stocks for FBgn0085440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 13 of 411.30Up
Head2 10 of 4 3.40None
Eye0 00 of 4 1.00None
Thoracicoabdominal ganglion13 23 of 417.30Up
Salivary gland5 20 of 4 7.41None
Crop8 11 of 410.90Up
Midgut4 10 of 4 5.40None
Tubule4 00 of 4 5.50Up
Hindgut3 00 of 4 4.30None
Heart3 10 of 4 4.22None
Fat body3 20 of 4 4.38None
Ovary3 10 of 4 3.90None
Testis4 10 of 4 5.30Up
Male accessory glands8 20 of 410.40Up
Virgin spermatheca5 20 of 4 6.66None
Mated spermatheca4 00 of 4 5.66Up
Adult carcass9 40 of 411.60None
Larval CNS2 10 of 4 3.44None
Larval Salivary gland2 00 of 4 2.59None
Larval midgut6 20 of 4 8.44None
Larval tubule3 10 of 4 4.70None
Larval hindgut0 00 of 4 0.88None
Larval fat body5 10 of 4 6.50None
Larval trachea1 00 of 4 1.66None
Larval carcass1 00 of 4 1.97None
S2 cells (growing)2 00 of 4 3.50None
Whole fly0 00 of 4

Looking for FBgn0085440. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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