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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085442 through 18771 annotations produced 2 hits



CG32836 (NKAIN):

Annotation Number : CG9047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085442
Gbrowse : chr2R:20769091-20773973 (+) // 100.0 //
Probeset : 1625992_s_at
Accessions : protein= NP_001097449; /// NP_001163297; /// NP_611975; /// NP_726492; /// NP_726493;, nucleotide= NM_001103979; /// NM_001169826; /// NM_138131; /// NM_166693; /// NM_166694;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085442.
Homophila reports that CG9047 is a close match (8e-43) to human gene TCBA1 (NP_001035304), a gene associated with Developmental delay and recurrent infections (3).
VDRC has 8 RNAi stocks for FBgn0085442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 84 of 4 3.30Up
Head89 74 of 4 1.30None
Eye65 54 of 4 0.94None
Thoracicoabdominal ganglion224 84 of 4 3.20Up
Salivary gland43 44 of 4 0.63Down
Crop55 64 of 4 0.80None
Midgut119 54 of 4 1.70Up
Tubule81 24 of 4 1.20Up
Hindgut50 54 of 4 0.70Down
Heart59 34 of 4 0.86None
Fat body89 104 of 4 1.29Up
Ovary110 44 of 4 1.60Up
Testis12 13 of 4 0.20Down
Male accessory glands48 14 of 4 0.70Down
Virgin spermatheca32 04 of 4 0.47Down
Mated spermatheca39 14 of 4 0.57Down
Adult carcass84 24 of 4 1.20None
Larval CNS54 64 of 4 0.78Down
Larval Salivary gland48 14 of 4 0.70Down
Larval midgut185 144 of 4 2.66Up
Larval tubule85 34 of 4 1.20Up
Larval hindgut89 14 of 4 1.29Up
Larval fat body75 64 of 4 1.10None
Larval trachea83 164 of 4 1.20None
Larval carcass51 84 of 4 0.73None
S2 cells (growing)469 94 of 4 6.75Up
Whole fly69 44 of 4



CG32836 (NKAIN):

Annotation Number : CG32836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085442
Gbrowse : chr2R:20774745-20775893 (+) // 100.0 //
Probeset : 1633752_at
Accessions : protein= NP_001097449; /// NP_001163297; /// NP_611975; /// NP_726492; /// NP_726493;, nucleotide= NM_001103979; /// NM_001169826; /// NM_138131; /// NM_166693; /// NM_166694;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085442.
VDRC has 8 RNAi stocks for FBgn0085442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 94 of 4 1.50Up
Head67 14 of 4 1.20None
Eye77 34 of 4 1.33Up
Thoracicoabdominal ganglion103 44 of 4 1.80Up
Salivary gland159 124 of 4 2.73Up
Crop171 34 of 4 2.90Up
Midgut56 34 of 4 1.00None
Tubule46 34 of 4 0.80Down
Hindgut115 34 of 4 2.00Up
Heart69 54 of 4 1.19None
Fat body75 74 of 4 1.30Up
Ovary70 24 of 4 1.20Up
Testis36 34 of 4 0.60Down
Male accessory glands78 24 of 4 1.40Up
Virgin spermatheca59 63 of 4 1.02None
Mated spermatheca51 14 of 4 0.89None
Adult carcass119 94 of 4 2.00Up
Larval CNS87 74 of 4 1.51Up
Larval Salivary gland88 24 of 4 1.53Up
Larval midgut75 64 of 4 1.29None
Larval tubule30 04 of 4 0.50Down
Larval hindgut128 64 of 4 2.20Up
Larval fat body26 24 of 4 0.50Down
Larval trachea84 54 of 4 1.45Up
Larval carcass170 84 of 4 2.92Up
S2 cells (growing)450 54 of 4 7.73Up
Whole fly58 34 of 4

Looking for FBgn0085442. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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