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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085444 through 18771 annotations produced 1 hits



CG33455 (mute):

Annotation Number : CG15610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085444
Gbrowse : chr2R:12835799-12842660 (-) // 100.0 //
Probeset : 1628478_at
Accessions : protein= NP_001097352; /// NP_995863;, nucleotide= NM_001103882; /// NM_206141;
Pathway : DNA-dependent // inferred from electronic annotation /// 0046716 // muscle cell homeostasis // inferred from mutant phe
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0035363 // histone locus body // inferred from direct assa
FlyMine data for FBgn0085444.
VDRC has 3 RNAi stocks for FBgn0085444 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 34 of 4 0.70Down
Head39 34 of 4 0.30Down
Eye29 14 of 4 0.26Down
Thoracicoabdominal ganglion73 14 of 4 0.70Down
Salivary gland66 94 of 4 0.59Down
Crop57 34 of 4 0.50Down
Midgut37 14 of 4 0.30Down
Tubule39 24 of 4 0.40Down
Hindgut33 14 of 4 0.30Down
Heart23 14 of 4 0.21Down
Fat body42 74 of 4 0.38Down
Ovary457 184 of 4 4.10Up
Testis48 24 of 4 0.40Down
Male accessory glands58 24 of 4 0.50Down
Virgin spermatheca72 94 of 4 0.65Down
Mated spermatheca75 34 of 4 0.67Down
Adult carcass33 14 of 4 0.30Down
Larval CNS311 564 of 4 2.78Up
Larval Salivary gland158 104 of 4 1.42Up
Larval midgut65 44 of 4 0.59Down
Larval tubule56 44 of 4 0.50Down
Larval hindgut76 34 of 4 0.69Down
Larval fat body63 34 of 4 0.60Down
Larval trachea63 44 of 4 0.57Down
Larval carcass73 14 of 4 0.66Down
S2 cells (growing)170 84 of 4 1.52Up
Whole fly111 34 of 4

Looking for FBgn0085444. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime