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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085447 through 18771 annotations produced 2 hits



still life type 1 (sif):

Annotation Number : CG32414
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085447
Gbrowse : chr3L:5733724-5735148 (+) // 100.0 //
Probeset : 1624866_at
Accessions : protein= NP_001097516; /// NP_001097517; /// NP_001097518; /// NP_001097519; /// NP_001137892; /// NP_524647; /// NP_729084; /// NP_996000;, nucleotide= NM_001104046; /// NM_001104047; /// NM_001104048; /// NM_001104049; /// NM_001144420; /// NM_079908; /// NM_168126; /// NM_206278;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic
Interpro : 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide e
FlyMine data for FBgn0085447.
TRiP has 1 RNAi stocks for FBgn0085447 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 24 of 4 6.10Up
Head5 31 of 4 2.00None
Eye1 00 of 4 0.62None
Thoracicoabdominal ganglion10 13 of 4 4.10Up
Salivary gland4 21 of 4 1.69None
Crop7 10 of 4 3.00Up
Midgut3 10 of 4 1.50None
Tubule2 00 of 4 1.10None
Hindgut8 11 of 4 3.20Up
Heart4 00 of 4 1.70None
Fat body11 20 of 4 4.61Up
Ovary3 10 of 4 1.30None
Testis3 00 of 4 1.30None
Male accessory glands10 20 of 4 4.30None
Virgin spermatheca3 11 of 4 1.53None
Mated spermatheca5 00 of 4 2.17Up
Adult carcass6 10 of 4 2.40None
Larval CNS6 21 of 4 2.61Up
Larval Salivary gland4 11 of 4 1.78None
Larval midgut6 10 of 4 2.67Up
Larval tubule6 10 of 4 2.40None
Larval hindgut6 10 of 4 2.59Up
Larval fat body2 00 of 4 1.00None
Larval trachea5 20 of 4 2.20None
Larval carcass3 10 of 4 1.28None
S2 cells (growing)3 10 of 4 1.25None
Whole fly2 00 of 4



still life type 1 (sif):

Annotation Number : CG5406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085447
Gbrowse : chr3L:5660919-5741139 (+) // 100.0 //
Probeset : 1637828_a_at
Accessions : protein= NP_001097516; /// NP_001097517; /// NP_001097518; /// NP_001097519; /// NP_001137892; /// NP_524647; /// NP_729084; /// NP_996000;, nucleotide= NM_001104046; /// NM_001104047; /// NM_001104048; /// NM_001104049; /// NM_001144420; /// NM_079908; /// NM_168126; /// NM_206278;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic
Interpro : 0005057 // receptor signaling protein activity // inferred from electronic annotation /// 0005085 // guanyl-nucleotide e
FlyMine data for FBgn0085447.
Homophila reports that CG5406 is a close match (2e-17) to human gene ARHGEF6;COOL2;MRX46 (NP_004831), a gene associated with Mental retardation, X-linked nonspecific, type 46, 300436 (3).
BioGrid reports that CG5406 interacts with CG3665 CG3665 .
TRiP has 1 RNAi stocks for FBgn0085447 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2257 894 of 424.70Up
Head678 584 of 4 7.40Up
Eye563 294 of 4 6.17Up
Thoracicoabdominal ganglion2118 1284 of 423.20Up
Salivary gland20 32 of 4 0.22Down
Crop22 14 of 4 0.20Down
Midgut6 12 of 4 0.10Down
Tubule10 11 of 4 0.10Down
Hindgut42 34 of 4 0.50Down
Heart13 33 of 4 0.15Down
Fat body28 44 of 4 0.31Down
Ovary3 01 of 4 0.00Down
Testis7 04 of 4 0.10Down
Male accessory glands39 44 of 4 0.40Down
Virgin spermatheca15 14 of 4 0.17Down
Mated spermatheca17 24 of 4 0.20Down
Adult carcass33 14 of 4 0.40Down
Larval CNS610 774 of 4 6.69Up
Larval Salivary gland8 31 of 4 0.10Down
Larval midgut6 10 of 4 0.07Down
Larval tubule7 11 of 4 0.10Down
Larval hindgut44 74 of 4 0.49Down
Larval fat body7 20 of 4 0.10Down
Larval trachea11 151 of 4 0.13Down
Larval carcass16 14 of 4 0.19Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly91 124 of 4

Looking for FBgn0085447. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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