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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085466 through 18771 annotations produced 1 hits



(CG34437):

Annotation Number : CG16918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085466
Gbrowse : chr3R:24107424-24112159 (+) // 100.0 //
Probeset : 1626896_at
Accessions : protein= NP_001097955;, nucleotide= NM_001104485;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085466.
VDRC has 1 RNAi stocks for FBgn0085466 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 1.00None
Head15 ± 04 of 4 3.20Up
Eye7 ± 11 of 4 1.68None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland5 ± 20 of 4 1.16None
Crop3 ± 10 of 4 0.70None
Midgut3 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.40None
Heart30 ± 24 of 4 6.44Up
Fat body6 ± 20 of 4 1.31None
Ovary0 ± 00 of 4 0.20Down
Testis5 ± 11 of 4 1.20None
Male accessory glands3 ± 00 of 4 0.70None
Virgin spermatheca2 ± 00 of 4 0.53None
Mated spermatheca7 ± 00 of 4 1.59Up
Adult carcass11 ± 31 of 4 2.40None
Larval CNS1 ± 10 of 4 0.35Down
Larval Salivary gland9 ± 10 of 4 1.98Up
Larval midgut2 ± 00 of 4 0.41Down
Larval tubule2 ± 00 of 4 0.50Down
Larval hindgut11 ± 23 of 4 2.38None
Larval fat body127 ± 104 of 426.90Up
Larval trachea19 ± 14 of 4 4.12Up
Larval carcass26 ± 34 of 4 5.59Up
S2 cells (growing)28 ± 54 of 4 5.98Up
Whole fly4 ± 00 of 4

Looking for FBgn0085466. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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