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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085473 through 18771 annotations produced 1 hits



(CG34444):

Annotation Number : CG30070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085473
Gbrowse : chr2R:10254551-10257786 (+) // 100.0 //
Probeset : 1623720_at
Accessions : protein= NP_001097313;, nucleotide= NM_001103843;
FlyMine data for FBgn0085473.
VDRC has 2 RNAi stocks for FBgn0085473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.70None
Head2 00 of 4 0.60None
Eye3 00 of 4 0.85None
Thoracicoabdominal ganglion1 00 of 4 0.30Down
Salivary gland22 40 of 4 4.87Up
Crop7 11 of 4 1.60None
Midgut9 11 of 4 2.00Up
Tubule6 00 of 4 1.40Up
Hindgut6 11 of 4 1.50None
Heart3 10 of 4 0.82None
Fat body17 24 of 4 3.80Up
Ovary2 00 of 4 0.50None
Testis1 00 of 4 0.30Down
Male accessory glands11 11 of 4 2.50Up
Virgin spermatheca9 02 of 4 2.02Up
Mated spermatheca10 11 of 4 2.27Up
Adult carcass11 20 of 4 2.30None
Larval CNS8 11 of 4 1.82Up
Larval Salivary gland9 02 of 4 2.04Up
Larval midgut10 02 of 4 2.12Up
Larval tubule5 10 of 4 1.10None
Larval hindgut8 13 of 4 1.86None
Larval fat body3 10 of 4 0.80None
Larval trachea4 12 of 4 0.99None
Larval carcass6 00 of 4 1.38None
S2 cells (growing)4 11 of 4 1.05None
Whole fly4 00 of 4

Looking for FBgn0085473. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime