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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085477 through 18771 annotations produced 1 hits



(CG34448):

Annotation Number : CG31684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085477
Gbrowse : chr2L:2416970-2419771 (-) // 100.0 //
Probeset : 1633402_at
Accessions : protein= NP_001097059;, nucleotide= NM_001103589;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0085477.
Homophila reports that CG31684 is a close match (2e-21) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
VDRC has 1 RNAi stocks for FBgn0085477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head4 ± 10 of 4 0.50None
Eye5 ± 10 of 4 0.71None
Thoracicoabdominal ganglion5 ± 10 of 4 0.60None
Salivary gland18 ± 70 of 4 2.38None
Crop5 ± 10 of 4 0.70None
Midgut7 ± 20 of 4 0.90None
Tubule4 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 0.60None
Heart5 ± 21 of 4 0.73None
Fat body6 ± 30 of 4 0.87None
Ovary5 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.20None
Male accessory glands6 ± 20 of 4 0.80None
Virgin spermatheca7 ± 10 of 4 0.91None
Mated spermatheca5 ± 10 of 4 0.65None
Adult carcass9 ± 30 of 4 1.20None
Larval CNS2 ± 10 of 4 0.31None
Larval Salivary gland8 ± 20 of 4 1.02None
Larval midgut9 ± 10 of 4 1.20None
Larval tubule4 ± 20 of 4 0.60None
Larval hindgut5 ± 20 of 4 0.63None
Larval fat body4 ± 10 of 4 0.60None
Larval trachea4 ± 30 of 4 0.60None
Larval carcass7 ± 10 of 4 0.98None
S2 cells (growing)3 ± 10 of 4 0.40None
Whole fly7 ± 20 of 4

Looking for FBgn0085477. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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