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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085480 through 18771 annotations produced 1 hits



(CG34451):

Annotation Number : HDC10334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085480
Gbrowse : chr3L:15684723-15686229 (-) // 100.0 //
Probeset : 1635274_at
Accessions : protein= NP_001097612;, nucleotide= NM_001104142;
Interpro : "0008378 // galactosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase
FlyMine data for FBgn0085480.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.50None
Head4 ± 10 of 4 0.50None
Eye2 ± 00 of 4 0.30None
Thoracicoabdominal ganglion2 ± 00 of 4 0.30None
Salivary gland5 ± 30 of 4 0.70None
Crop3 ± 00 of 4 0.40None
Midgut74 ± 24 of 4 9.00Up
Tubule4 ± 00 of 4 0.60Down
Hindgut14 ± 12 of 4 1.70None
Heart2 ± 10 of 4 0.33None
Fat body7 ± 20 of 4 0.90None
Ovary2 ± 00 of 4 0.30None
Testis3 ± 10 of 4 0.40None
Male accessory glands6 ± 20 of 4 0.80None
Virgin spermatheca5 ± 10 of 4 0.67None
Mated spermatheca5 ± 20 of 4 0.68None
Adult carcass10 ± 30 of 4 1.30None
Larval CNS2 ± 10 of 4 0.26None
Larval Salivary gland8 ± 20 of 4 1.02None
Larval midgut175 ± 124 of 421.16Up
Larval tubule9 ± 31 of 4 1.20None
Larval hindgut28 ± 14 of 4 3.41Up
Larval fat body4 ± 10 of 4 0.60None
Larval trachea3 ± 21 of 4 0.43None
Larval carcass1 ± 00 of 4 0.23None
S2 cells (growing)4 ± 11 of 4 0.52None
Whole fly8 ± 20 of 4

Looking for FBgn0085480. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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