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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085491 through 18771 annotations produced 1 hits



(CG34462):

Annotation Number : CG7072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085491
Gbrowse : chr3L:8318755-8323216 (+) // 100.0 //
Probeset : 1633484_at
Accessions : protein= NP_001097548;, nucleotide= NM_001104078;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0085491.
VDRC has 1 RNAi stocks for FBgn0085491 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye3 00 of 4 0.31Down
Thoracicoabdominal ganglion3 00 of 4 0.30Down
Salivary gland6 20 of 4 0.50None
Crop0 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.20Down
Hindgut732 364 of 460.70Up
Heart1 00 of 4 0.12Down
Fat body4 20 of 4 0.37Down
Ovary2 10 of 4 0.20Down
Testis4 11 of 4 0.40Down
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca3 00 of 4 0.25Down
Mated spermatheca2 10 of 4 0.21Down
Adult carcass4 10 of 4 0.40Down
Larval CNS4 01 of 4 0.38Down
Larval Salivary gland7 20 of 4 0.61None
Larval midgut7 10 of 4 0.61None
Larval tubule1 00 of 4 0.10Down
Larval hindgut9 03 of 4 0.79None
Larval fat body3 10 of 4 0.30Down
Larval trachea169 634 of 414.00Up
Larval carcass7 12 of 4 0.58None
S2 cells (growing)3 01 of 4 0.25Down
Whole fly12 12 of 4

Looking for FBgn0085491. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime