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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085734 through 18771 annotations produced 2 hits



():

Annotation Number : CG40450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085734
Gbrowse : chrX:4971169-4974641 (-) // 90.11 // /// chrU:2072071-2074746 (-) // 100.0 //
Probeset : 1627276_a_at
Accessions : protein= NP_001162674; /// NP_001162675; /// NP_572203; /// NP_996351;, nucleotide= NM_001169203; /// NM_001169204; /// NM_131975; /// NM_206628;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0085734.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 410.60Up
Head1 ± 00 of 4 3.20None
Eye18 ± 54 of 443.59Up
Thoracicoabdominal ganglion2 ± 10 of 4 6.50None
Salivary gland4 ± 10 of 410.29None
Crop3 ± 00 of 4 9.20Up
Midgut2 ± 10 of 4 5.80None
Tubule0 ± 00 of 4 2.10Up
Hindgut1 ± 00 of 4 4.50None
Heart1 ± 10 of 4 4.29None
Fat body0 ± 00 of 4 1.94None
Ovary1 ± 00 of 4 3.60None
Testis1 ± 00 of 4 3.50None
Male accessory glands1 ± 00 of 4 2.90None
Virgin spermatheca1 ± 00 of 4 3.88None
Mated spermatheca1 ± 00 of 4 3.71None
Adult carcass0 ± 00 of 4 2.20None
Larval CNS2 ± 10 of 4 4.82None
Larval Salivary gland1 ± 00 of 4 3.47None
Larval midgut0 ± 00 of 4 1.94None
Larval tubule2 ± 10 of 4 5.70None
Larval hindgut1 ± 00 of 4 4.24None
Larval fat body4 ± 10 of 411.10None
Larval trachea1 ± 10 of 4 2.88None
Larval carcass2 ± 00 of 4 6.18Up
S2 cells (growing)1 ± 00 of 4 4.53None
Whole fly0 ± 00 of 4



(CG32767):

Annotation Number : CG40450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052767 /// FBgn0085734
Gbrowse : chrU:2072071-2074746 (-) // 100.0 // /// chrX:4971169-4974641 (-) // 90.11 //
Probeset : 1633444_s_at
Accessions : protein= NP_001162674; /// NP_001162675; /// NP_572203; /// NP_996351;, nucleotide= NM_001169203; /// NM_001169204; /// NM_131975; /// NM_206628;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0052767 /// FBgn0085734.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 1.60None
Head9 ± 13 of 4 0.70None
Eye9 ± 11 of 4 0.68None
Thoracicoabdominal ganglion12 ± 23 of 4 0.90None
Salivary gland6 ± 10 of 4 0.50None
Crop9 ± 32 of 4 0.70None
Midgut7 ± 02 of 4 0.50None
Tubule3 ± 00 of 4 0.20Down
Hindgut9 ± 22 of 4 0.70None
Heart0 ± 00 of 4 0.05Down
Fat body5 ± 21 of 4 0.40Down
Ovary16 ± 04 of 4 1.20None
Testis18 ± 24 of 4 1.30None
Male accessory glands12 ± 21 of 4 0.90None
Virgin spermatheca2 ± 00 of 4 0.19Down
Mated spermatheca4 ± 10 of 4 0.32Down
Adult carcass11 ± 30 of 4 0.80None
Larval CNS15 ± 24 of 4 1.14None
Larval Salivary gland5 ± 10 of 4 0.38Down
Larval midgut6 ± 10 of 4 0.50None
Larval tubule9 ± 10 of 4 0.70None
Larval hindgut5 ± 10 of 4 0.39Down
Larval fat body3 ± 11 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.15Down
Larval carcass5 ± 10 of 4 0.39Down
S2 cells (growing)16 ± 14 of 4 1.24None
Whole fly13 ± 24 of 4

Looking for FBgn0085734. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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