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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0085812 through 18771 annotations produced 1 hits



():

Annotation Number : CG40338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085812
Gbrowse : chr3RHet:2481659-2482418 (-) // 100.0 //
Probeset : 1636850_at
Accessions : protein= , nucleotide= NR_004368;
FlyMine data for FBgn0085812.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.40None
Head4 ± 10 of 4 0.40Down
Eye2 ± 10 of 4 0.29Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.40Down
Salivary gland12 ± 30 of 4 1.44None
Crop7 ± 21 of 4 0.80None
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.20Down
Heart2 ± 10 of 4 0.24Down
Fat body6 ± 10 of 4 0.70None
Ovary0 ± 00 of 4 0.00Down
Testis103 ± 64 of 411.70Up
Male accessory glands14 ± 10 of 4 1.60Up
Virgin spermatheca6 ± 11 of 4 0.71None
Mated spermatheca6 ± 10 of 4 0.74None
Adult carcass6 ± 30 of 4 0.80None
Larval CNS5 ± 21 of 4 0.63None
Larval Salivary gland5 ± 11 of 4 0.57None
Larval midgut1 ± 00 of 4 0.14Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.17Down
Larval fat body16 ± 71 of 4 1.90None
Larval trachea4 ± 32 of 4 0.52None
Larval carcass2 ± 10 of 4 0.31Down
S2 cells (growing)1 ± 00 of 4 0.18Down
Whole fly8 ± 14 of 4

Looking for FBgn0085812. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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