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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086130 through 18771 annotations produced 1 hits



KH1 (KH1):

Annotation Number : CG3561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086130
Gbrowse : chr2L:811631-813389 (+) // 100.0 //
Probeset : 1633791_at
Accessions : protein= NP_608544;, nucleotide= NM_134700;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activi
FlyMine data for FBgn0086130.
VDRC has 2 RNAi stocks for FBgn0086130 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 14 of 4 0.50Down
Head37 ± 24 of 4 0.50Down
Eye41 ± 24 of 4 0.58Down
Thoracicoabdominal ganglion61 ± 24 of 4 0.90None
Salivary gland69 ± 44 of 4 0.97None
Crop53 ± 34 of 4 0.70Down
Midgut53 ± 20 of 4 0.70Down
Tubule64 ± 44 of 4 0.90None
Hindgut62 ± 24 of 4 0.90None
Heart40 ± 14 of 4 0.57Down
Fat body44 ± 74 of 4 0.62Down
Ovary148 ± 14 of 4 2.10Up
Testis17 ± 04 of 4 0.20Down
Male accessory glands77 ± 74 of 4 1.10None
Virgin spermatheca55 ± 04 of 4 0.77Down
Mated spermatheca56 ± 34 of 4 0.78Down
Adult carcass50 ± 44 of 4 0.70Down
Larval CNS81 ± 54 of 4 1.14None
Larval Salivary gland65 ± 24 of 4 0.92None
Larval midgut50 ± 30 of 4 0.70Down
Larval tubule49 ± 14 of 4 0.70Down
Larval hindgut63 ± 14 of 4 0.89None
Larval fat body36 ± 54 of 4 0.50Down
Larval trachea71 ± 74 of 4 1.00None
Larval carcass56 ± 44 of 4 0.78Down
S2 cells (growing)102 ± 54 of 4 1.42Up
Whole fly71 ± 44 of 4

Looking for FBgn0086130. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime