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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086265 through 18771 annotations produced 1 hits



CG9050 (psd):

Annotation Number : CG9050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086265
Gbrowse : chr2L:5963137-5964322 (-) // 100.0 //
Probeset : 1639805_at
Accessions : protein= NP_608974;, nucleotide= NM_135130;
Pathway : 0042600 // chorion // inferred from direct assay /// 0060388 // vitelline envelope // inferred from direct assay
FlyMine data for FBgn0086265.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.00Down
Salivary gland13 ± 40 of 4 0.06Down
Crop9 ± 21 of 4 0.00Down
Midgut16 ± 11 of 4 0.10Down
Tubule9 ± 20 of 4 0.00Down
Hindgut7 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body9 ± 40 of 4 0.04Down
Ovary347 ± 754 of 4 1.50None
Testis8 ± 10 of 4 0.00Down
Male accessory glands5 ± 30 of 4 0.00Down
Virgin spermatheca7 ± 30 of 4 0.03Down
Mated spermatheca6 ± 10 of 4 0.03Down
Adult carcass25 ± 80 of 4 0.10Down
Larval CNS7 ± 30 of 4 0.03Down
Larval Salivary gland10 ± 11 of 4 0.04Down
Larval midgut14 ± 30 of 4 0.06Down
Larval tubule10 ± 10 of 4 0.00Down
Larval hindgut11 ± 10 of 4 0.05Down
Larval fat body6 ± 20 of 4 0.00Down
Larval trachea9 ± 31 of 4 0.04Down
Larval carcass8 ± 11 of 4 0.03Down
S2 cells (growing)8 ± 01 of 4 0.03Down
Whole fly239 ± 464 of 4

Looking for FBgn0086265. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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