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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086350 through 18771 annotations produced 1 hits



teflon (tef):

Annotation Number : CG8961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086350
Gbrowse : chr2R:12942047-12944321 (-) // 100.0 //
Probeset : 1638779_at
Accessions : protein= NP_523766;, nucleotide= NM_079042;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0086350.
TRiP has 3 RNAi stocks for FBgn0086350 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 64 of 4 0.40Down
Head21 14 of 4 0.10Down
Eye9 13 of 4 0.06Down
Thoracicoabdominal ganglion53 24 of 4 0.30Down
Salivary gland18 31 of 4 0.11Down
Crop25 14 of 4 0.20Down
Midgut25 04 of 4 0.20Down
Tubule20 23 of 4 0.10Down
Hindgut19 24 of 4 0.10Down
Heart6 03 of 4 0.04Down
Fat body5 42 of 4 0.04Down
Ovary649 194 of 4 4.10Up
Testis32 24 of 4 0.20Down
Male accessory glands15 24 of 4 0.10Down
Virgin spermatheca14 22 of 4 0.09Down
Mated spermatheca17 24 of 4 0.11Down
Adult carcass14 31 of 4 0.10Down
Larval CNS286 394 of 4 1.81Up
Larval Salivary gland11 24 of 4 0.07Down
Larval midgut15 14 of 4 0.10Down
Larval tubule10 13 of 4 0.10Down
Larval hindgut29 24 of 4 0.19Down
Larval fat body9 31 of 4 0.10Down
Larval trachea34 64 of 4 0.22Down
Larval carcass20 24 of 4 0.13Down
S2 cells (growing)86 24 of 4 0.55Down
Whole fly158 84 of 4

Looking for FBgn0086350. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime