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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0086356 through 18771 annotations produced 1 hits


tumbleweed (tum):

Annotation Number : CG13345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086356
Gbrowse : chr2R:9743647-9746222 (-) // 100.0 //
Probeset : 1634690_at
Accessions : protein= NP_610912;, nucleotide= NM_137068;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator
FlyMine data for FBgn0086356.
Homophila reports that CG13345 is a close match (3e-14) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
BioGrid reports that CG13345 interacts with CG2845 CG10491 CG1004 CG2248 CG2248 CG12530 CG3938 CG10295 CG4531 .
TRiP has 5 RNAi stocks for FBgn0086356 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086356 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland13 ± 51 of 4 0.08Down
Crop8 ± 00 of 4 0.10Down
Midgut13 ± 10 of 4 0.10Down
Tubule7 ± 10 of 4 0.00Down
Hindgut6 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body3 ± 10 of 4 0.02Down
Ovary445 ± 124 of 4 2.60Up
Testis82 ± 74 of 4 0.50Down
Male accessory glands4 ± 00 of 4 0.00Down
Virgin spermatheca7 ± 20 of 4 0.04Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass11 ± 20 of 4 0.10Down
Larval CNS296 ± 134 of 4 1.71Up
Larval Salivary gland14 ± 20 of 4 0.08Down
Larval midgut24 ± 20 of 4 0.14Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut19 ± 14 of 4 0.11Down
Larval fat body25 ± 52 of 4 0.10Down
Larval trachea52 ± 74 of 4 0.31Down
Larval carcass33 ± 13 of 4 0.19Down
S2 cells (growing)336 ± 114 of 4 1.94Up
Whole fly173 ± 94 of 4

Looking for FBgn0086356. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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