FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086357 through 18771 annotations produced 1 hits

March 2006 (FlyBase/BDGP 5.3) (chr2L:6477532-6480489 (-) // 100.0 //):

Annotation Number : CG9539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-17-31
Gbrowse :
Probeset : 1638663_at
Accessions : protein= , nucleotide=
Interpro : "0006616 // SRP-dependent cotranslational protein targeting to membrane
FlyMine data for chr2-17-31.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	434 ± 5	4 of 4	0.50	Down
Head	726 ± 77	4 of 4	0.90	None
Eye	335 ± 24	4 of 4	0.40	Down
Thoracicoabdominal ganglion	448 ± 17	4 of 4	0.50	Down
Salivary gland	2424 ± 51	4 of 4	2.88	Up
Crop	756 ± 27	4 of 4	0.90	None
Midgut	1800 ± 18	4 of 4	2.10	Up
Tubule	1181 ± 77	4 of 4	1.40	Up
Hindgut	724 ± 3	4 of 4	0.90	Down
Heart	666 ± 44	4 of 4	0.79	Down
Fat body	1391 ± 209	4 of 4	1.66	Up
Ovary	704 ± 22	4 of 4	0.80	Down
Testis	337 ± 14	4 of 4	0.40	Down
Male accessory glands	3529 ± 54	4 of 4	4.20	Up
Virgin spermatheca	1590 ± 31	4 of 4	1.89	Up
Mated spermatheca	1877 ± 127	4 of 4	2.23	Up
Adult carcass	1039 ± 31	4 of 4	1.20	Up
Larval CNS	630 ± 14	4 of 4	0.75	Down
Larval Salivary gland	3625 ± 324	4 of 4	4.31	Up
Larval midgut	1208 ± 54	4 of 4	1.44	Up
Larval tubule	887 ± 25	4 of 4	1.10	None
Larval hindgut	877 ± 34	4 of 4	1.04	None
Larval fat body	1977 ± 303	4 of 4	2.40	Up
Larval trachea	800 ± 169	4 of 4	0.95	None
Larval carcass	1090 ± 58	4 of 4	1.30	Up
S2 cells (growing)	1624 ± 27	4 of 4	1.93	Up
Whole fly	840 ± 33	4 of 4

Looking for FBgn0086357. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720