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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086359 through 18771 annotations produced 1 hits



Invadolysin (Invadolysin):

Annotation Number : CG3953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086359
Gbrowse : chr3R:5970420-5984031 (+) // 100.0 //
Probeset : 1625685_at
Accessions : protein= NP_652072;, nucleotide= NM_143815;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0004222 // metalloendopeptidase activity // inferred from direct assay /// 0004222 // metalloendopeptidase activity // i
FlyMine data for FBgn0086359.
BioGrid reports that CG3953 interacts with CG17883 CG4457 CG4719 CG6179 CG6508 CG6565 CG7399 CG7766 CG8089 CG8383 CG8942 CG9911 .
VDRC has 1 RNAi stocks for FBgn0086359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 54 of 4 7.30Up
Head105 84 of 4 3.00Up
Eye46 34 of 4 1.32None
Thoracicoabdominal ganglion229 144 of 4 6.50Up
Salivary gland6 20 of 4 0.18Down
Crop14 11 of 4 0.40Down
Midgut4 10 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut25 14 of 4 0.70None
Heart72 74 of 4 2.05Up
Fat body202 724 of 4 5.73Up
Ovary31 04 of 4 0.90None
Testis49 24 of 4 1.40Up
Male accessory glands9 00 of 4 0.30Down
Virgin spermatheca21 24 of 4 0.60Down
Mated spermatheca26 24 of 4 0.75None
Adult carcass101 74 of 4 2.90Up
Larval CNS110 154 of 4 3.11Up
Larval Salivary gland9 00 of 4 0.26Down
Larval midgut7 10 of 4 0.21Down
Larval tubule20 24 of 4 0.60Down
Larval hindgut11 13 of 4 0.33Down
Larval fat body5 22 of 4 0.20Down
Larval trachea15 23 of 4 0.43Down
Larval carcass37 114 of 4 1.05None
S2 cells (growing)29 14 of 4 0.85None
Whole fly35 44 of 4

Looking for FBgn0086359. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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