FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086361 through 18771 annotations produced 3 hits

alphabet (alph):

Annotation Number : CG1906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086361
Gbrowse : chr3R:25417543-25442879 (+) // 100.0 //
Probeset : 1631146_at
Accessions : protein= NP_651701; /// NP_733295; /// NP_733296; /// NP_733297; /// NP_733298;, nucleotide= NM_143444; /// NM_170416; /// NM_170417; /// NM_170418; /// NM_170419;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0086361.
BioGrid reports that CG1906 interacts with CG12460 CG3044 CG4060 CG4258 .
TRiP has 2 RNAi stocks for FBgn0086361 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086361 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.10	Down
Head	4 ± 0	2 of 4	0.20	Down
Eye	2 ± 0	0 of 4	0.12	Down
Thoracicoabdominal ganglion	5 ± 0	2 of 4	0.30	Down
Salivary gland	12 ± 4	2 of 4	0.58	None
Crop	6 ± 1	2 of 4	0.30	Down
Midgut	5 ± 0	3 of 4	0.30	Down
Tubule	5 ± 0	1 of 4	0.20	Down
Hindgut	4 ± 1	1 of 4	0.20	Down
Heart	1 ± 0	0 of 4	0.05	Down
Fat body	7 ± 0	3 of 4	0.34	Down
Ovary	44 ± 1	4 of 4	2.10	Up
Testis	19 ± 1	4 of 4	0.90	None
Male accessory glands	4 ± 1	1 of 4	0.20	Down
Virgin spermatheca	5 ± 0	1 of 4	0.24	Down
Mated spermatheca	4 ± 1	1 of 4	0.21	Down
Adult carcass	13 ± 2	3 of 4	0.60	Down
Larval CNS	24 ± 5	4 of 4	1.16	None
Larval Salivary gland	9 ± 0	4 of 4	0.47	Down
Larval midgut	4 ± 0	1 of 4	0.23	Down
Larval tubule	4 ± 1	1 of 4	0.20	Down
Larval hindgut	5 ± 0	3 of 4	0.24	Down
Larval fat body	12 ± 1	3 of 4	0.60	Down
Larval trachea	4 ± 1	1 of 4	0.21	Down
Larval carcass	4 ± 0	2 of 4	0.21	Down
S2 cells (growing)	6 ± 0	2 of 4	0.32	Down
Whole fly	21 ± 2	4 of 4

alphabet (alph):

Annotation Number : CG1906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086361
Gbrowse : chr3R:25417543-25424466 (+) // 100.0 //
Probeset : 1623708_at
Accessions : protein= NP_651701; /// NP_733295; /// NP_733296; /// NP_733297; /// NP_733298;, nucleotide= NM_143444; /// NM_170416; /// NM_170417; /// NM_170418; /// NM_170419;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0086361.
BioGrid reports that CG1906 interacts with CG12460 CG3044 CG4060 CG4258 .
TRiP has 2 RNAi stocks for FBgn0086361 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086361 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	196 ± 4	4 of 4	1.20	Up
Head	147 ± 7	4 of 4	0.90	None
Eye	173 ± 3	4 of 4	1.07	None
Thoracicoabdominal ganglion	139 ± 7	4 of 4	0.90	None
Salivary gland	183 ± 15	4 of 4	1.13	None
Crop	272 ± 13	4 of 4	1.70	Up
Midgut	199 ± 9	4 of 4	1.20	None
Tubule	57 ± 1	4 of 4	0.40	Down
Hindgut	241 ± 5	4 of 4	1.50	Up
Heart	174 ± 7	4 of 4	1.08	None
Fat body	143 ± 16	4 of 4	0.89	None
Ovary	198 ± 14	4 of 4	1.20	None
Testis	272 ± 5	4 of 4	1.70	Up
Male accessory glands	203 ± 9	4 of 4	1.30	Up
Virgin spermatheca	74 ± 2	4 of 4	0.46	Down
Mated spermatheca	69 ± 4	4 of 4	0.43	Down
Adult carcass	133 ± 2	4 of 4	0.80	None
Larval CNS	195 ± 22	4 of 4	1.21	None
Larval Salivary gland	139 ± 7	4 of 4	0.86	None
Larval midgut	216 ± 6	4 of 4	1.34	Up
Larval tubule	246 ± 15	4 of 4	1.50	Up
Larval hindgut	229 ± 9	4 of 4	1.42	Up
Larval fat body	177 ± 9	4 of 4	1.10	None
Larval trachea	265 ± 8	4 of 4	1.64	Up
Larval carcass	172 ± 7	4 of 4	1.06	None
S2 cells (growing)	323 ± 6	4 of 4	2.00	Up
Whole fly	161 ± 12	4 of 4

alphabet (alph):

Annotation Number : CG1906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086361
Gbrowse : chr3R:25417543-25424025 (+) // 100.0 //
Probeset : 1626162_s_at
Accessions : protein= NP_651701; /// NP_733295; /// NP_733296; /// NP_733297; /// NP_733298;, nucleotide= NM_143444; /// NM_170416; /// NM_170417; /// NM_170418; /// NM_170419;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0086361.
BioGrid reports that CG1906 interacts with CG12460 CG3044 CG4060 CG4258 .
TRiP has 2 RNAi stocks for FBgn0086361 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086361 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	190 ± 2	4 of 4	0.90	None
Head	144 ± 21	4 of 4	0.70	None
Eye	173 ± 7	4 of 4	0.78	None
Thoracicoabdominal ganglion	116 ± 14	4 of 4	0.50	Down
Salivary gland	135 ± 11	4 of 4	0.61	Down
Crop	262 ± 16	4 of 4	1.20	None
Midgut	216 ± 14	4 of 4	1.00	None
Tubule	59 ± 1	4 of 4	0.30	Down
Hindgut	261 ± 6	4 of 4	1.20	None
Heart	170 ± 6	4 of 4	0.76	None
Fat body	121 ± 30	4 of 4	0.54	Down
Ovary	207 ± 12	4 of 4	0.90	None
Testis	477 ± 9	4 of 4	2.10	Up
Male accessory glands	142 ± 5	4 of 4	0.60	None
Virgin spermatheca	42 ± 1	4 of 4	0.19	Down
Mated spermatheca	42 ± 3	4 of 4	0.19	Down
Adult carcass	159 ± 9	4 of 4	0.70	None
Larval CNS	188 ± 9	4 of 4	0.85	None
Larval Salivary gland	109 ± 11	4 of 4	0.49	Down
Larval midgut	135 ± 4	4 of 4	0.61	Down
Larval tubule	299 ± 15	4 of 4	1.30	None
Larval hindgut	188 ± 8	4 of 4	0.85	None
Larval fat body	282 ± 25	4 of 4	1.30	None
Larval trachea	195 ± 18	4 of 4	0.88	None
Larval carcass	90 ± 9	4 of 4	0.41	Down
S2 cells (growing)	518 ± 12	4 of 4	2.33	Up
Whole fly	222 ± 27	4 of 4

Looking for FBgn0086361. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720