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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086365 through 18771 annotations produced 1 hits



Organic cation transporter 2 (Orct2):

Annotation Number : CG13610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086365
Gbrowse : chr3R:20098752-20101013 (+) // 100.0 //
Probeset : 1636800_at
Accessions : protein= NP_651238;, nucleotide= NM_142981;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0086365.
Homophila reports that CG13610 is a close match (4e-37) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG13610 interacts with CG17210 CG5106 .
VDRC has 4 RNAi stocks for FBgn0086365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 24 of 4 1.20Up
Head34 04 of 4 1.10None
Eye43 34 of 4 1.35Up
Thoracicoabdominal ganglion46 24 of 4 1.40Up
Salivary gland104 124 of 4 3.25Up
Crop22 11 of 4 0.70Down
Midgut45 34 of 4 1.40Up
Tubule12 30 of 4 0.40Down
Hindgut54 44 of 4 1.70Up
Heart74 64 of 4 2.33Up
Fat body73 104 of 4 2.28Up
Ovary16 12 of 4 0.50Down
Testis29 14 of 4 0.90None
Male accessory glands199 324 of 4 6.20Up
Virgin spermatheca56 64 of 4 1.76Up
Mated spermatheca64 64 of 4 2.00Up
Adult carcass55 94 of 4 1.70None
Larval CNS136 194 of 4 4.24Up
Larval Salivary gland81 74 of 4 2.54Up
Larval midgut48 04 of 4 1.50Up
Larval tubule38 14 of 4 1.20Up
Larval hindgut124 24 of 4 3.87Up
Larval fat body12 20 of 4 0.40Down
Larval trachea106 154 of 4 3.33Up
Larval carcass47 44 of 4 1.49Up
S2 cells (growing)1171 414 of 436.45Up
Whole fly32 13 of 4

Looking for FBgn0086365. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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