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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086368 through 18771 annotations produced 1 hits



Protein O-mannosyltransferase 2 (tw):

Annotation Number : CG12311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086368
Gbrowse : chrX:678823-682073 (+) // 99.85 //
Probeset : 1639933_at
Accessions : protein= NP_569858;, nucleotide= NM_130502;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : "0000030 // mannosyltransferase activity // inferred from electronic annotation /// 0004169 // dolichyl-phosphate-mannos
FlyMine data for FBgn0086368.
Homophila reports that CG12311 is a close match (1e-50) to human gene POMT1 (NP_001070834), a gene associated with Muscular dystrophy, congenital, plus mental retardation, 236670 (3);Muscular dystrophy, limb-girdle, type 2K, 609308 (3);Walker-Warburg syndrome, 236670 (3).
VDRC has 2 RNAi stocks for FBgn0086368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30None
Head15 23 of 4 1.70None
Eye17 14 of 4 1.95Up
Thoracicoabdominal ganglion4 00 of 4 0.40None
Salivary gland8 10 of 4 0.92None
Crop58 44 of 4 6.30Up
Midgut9 10 of 4 1.10None
Tubule9 10 of 4 1.10None
Hindgut53 24 of 4 5.80Up
Heart6 10 of 4 0.65None
Fat body7 71 of 4 0.82None
Ovary2 00 of 4 0.30None
Testis7 12 of 4 0.80None
Male accessory glands76 54 of 4 8.30Up
Virgin spermatheca13 13 of 4 1.45None
Mated spermatheca16 23 of 4 1.75None
Adult carcass16 51 of 4 1.80None
Larval CNS6 13 of 4 0.75None
Larval Salivary gland11 10 of 4 1.26None
Larval midgut15 00 of 4 1.71None
Larval tubule9 00 of 4 1.00None
Larval hindgut80 14 of 4 8.67Up
Larval fat body9 10 of 4 1.10None
Larval trachea143 134 of 415.59Up
Larval carcass110 24 of 412.02Up
S2 cells (growing)0 00 of 4 0.10Down
Whole fly9 21 of 4

Looking for FBgn0086368. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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