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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086372 through 18771 annotations produced 1 hits



like-AP180 (lap):

Annotation Number : CG2520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086372
Gbrowse : chr3R:3012718-3026631 (+) // 100.0 //
Probeset : 1636846_at
Accessions : protein= NP_001138019; /// NP_001163538; /// NP_524252;, nucleotide= NM_001144547; /// NM_001170067; /// NM_079528;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005905 // coated pit // inferred from direct assa
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from el
FlyMine data for FBgn0086372.
BioGrid reports that CG2520 interacts with CG9253 .
TRiP has 3 RNAi stocks for FBgn0086372 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1073 254 of 425.60Up
Head351 154 of 4 8.40Up
Eye451 364 of 410.75Up
Thoracicoabdominal ganglion1104 424 of 426.30Up
Salivary gland22 24 of 4 0.54Down
Crop8 02 of 4 0.20Down
Midgut5 01 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut10 14 of 4 0.30Down
Heart99 124 of 4 2.36Up
Fat body12 34 of 4 0.30Down
Ovary3 00 of 4 0.10Down
Testis1 00 of 4 0.00Down
Male accessory glands8 21 of 4 0.20Down
Virgin spermatheca10 14 of 4 0.25Down
Mated spermatheca10 04 of 4 0.25Down
Adult carcass23 24 of 4 0.60Down
Larval CNS528 374 of 412.59Up
Larval Salivary gland51 24 of 4 1.23None
Larval midgut8 23 of 4 0.20Down
Larval tubule9 14 of 4 0.20Down
Larval hindgut19 14 of 4 0.47Down
Larval fat body8 21 of 4 0.20Down
Larval trachea20 124 of 4 0.49Down
Larval carcass24 24 of 4 0.58Down
S2 cells (growing)3 02 of 4 0.09Down
Whole fly42 34 of 4

Looking for FBgn0086372. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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