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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086377 through 18771 annotations produced 1 hits



Syntaxin 7 (Syx7):

Annotation Number : CG5081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086377
Gbrowse : chr3L:21438921-21441235 (+) // 100.0 //
Probeset : 1636575_s_at
Accessions : protein= NP_730632; /// NP_730633;, nucleotide= NM_168905; /// NM_168906;
Pathway : 0005769 // early endosome // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or stru
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005484 // SNAP receptor activi
FlyMine data for FBgn0086377.
TRiP has 1 RNAi stocks for FBgn0086377 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain518 ± 34 of 4 2.10Up
Head431 ± 164 of 4 1.80Up
Eye813 ± 174 of 4 3.32Up
Thoracicoabdominal ganglion431 ± 64 of 4 1.80Up
Salivary gland501 ± 144 of 4 2.04Up
Crop488 ± 94 of 4 2.00Up
Midgut367 ± 74 of 4 1.50Up
Tubule628 ± 164 of 4 2.60Up
Hindgut454 ± 74 of 4 1.90Up
Heart322 ± 94 of 4 1.31Up
Fat body223 ± 314 of 4 0.91None
Ovary330 ± 64 of 4 1.30Up
Testis359 ± 54 of 4 1.50Up
Male accessory glands229 ± 54 of 4 0.90None
Virgin spermatheca393 ± 184 of 4 1.60Up
Mated spermatheca277 ± 224 of 4 1.13None
Adult carcass278 ± 204 of 4 1.10None
Larval CNS274 ± 144 of 4 1.12Up
Larval Salivary gland253 ± 134 of 4 1.03None
Larval midgut614 ± 544 of 4 2.50Up
Larval tubule1188 ± 184 of 4 4.80Up
Larval hindgut474 ± 394 of 4 1.93Up
Larval fat body515 ± 324 of 4 2.10Up
Larval trachea298 ± 254 of 4 1.22Up
Larval carcass282 ± 324 of 4 1.15None
S2 cells (growing)482 ± 54 of 4 1.97Up
Whole fly245 ± 74 of 4

Looking for FBgn0086377. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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