Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086378 through 18771 annotations produced 2 hits



Apoptosis-linked gene-2 (Alg-2):

Annotation Number : CG40410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086378
Gbrowse : chr3RHet:1896443-1899043 (-) // 100.0 //
Probeset : 1634293_at
Accessions : protein= NP_001015400; /// NP_001104459;, nucleotide= NM_001015400; /// NM_001110989;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0086378.
VDRC has 1 RNAi stocks for FBgn0086378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 24 of 4 2.20Up
Head5 ± 10 of 4 0.60None
Eye8 ± 11 of 4 0.95None
Thoracicoabdominal ganglion12 ± 32 of 4 1.40None
Salivary gland23 ± 41 of 4 2.68None
Crop14 ± 13 of 4 1.70None
Midgut16 ± 14 of 4 2.00Up
Tubule17 ± 23 of 4 2.00Up
Hindgut13 ± 03 of 4 1.60Up
Heart6 ± 20 of 4 0.77None
Fat body16 ± 24 of 4 1.97Up
Ovary8 ± 04 of 4 1.00None
Testis10 ± 04 of 4 1.20None
Male accessory glands29 ± 43 of 4 3.50Up
Virgin spermatheca17 ± 14 of 4 2.04Up
Mated spermatheca13 ± 21 of 4 1.56None
Adult carcass19 ± 13 of 4 2.30Up
Larval CNS25 ± 34 of 4 2.97Up
Larval Salivary gland18 ± 14 of 4 2.20Up
Larval midgut15 ± 32 of 4 1.76None
Larval tubule24 ± 24 of 4 2.90Up
Larval hindgut14 ± 14 of 4 1.73Up
Larval fat body22 ± 23 of 4 2.60Up
Larval trachea10 ± 12 of 4 1.20None
Larval carcass17 ± 04 of 4 2.08Up
S2 cells (growing)9 ± 04 of 4 1.16None
Whole fly8 ± 12 of 4



Apoptosis-linked gene-2 (Alg-2):

Annotation Number : Stencil:3h:1513136:1535654:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086378
Gbrowse : chr3RHet:1873513-1896050 (-) // 99.95 // /// chr3RHet:1868399-1872841 (-) // 78.91 //
Probeset : 1624633_at
Accessions : protein= NP_001015400; /// NP_001104459;, nucleotide= NM_001015400; /// NM_001110989;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0086378.
VDRC has 1 RNAi stocks for FBgn0086378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 03 of 4 1.00None
Head5 ± 20 of 4 0.80None
Eye4 ± 10 of 4 0.57None
Thoracicoabdominal ganglion7 ± 10 of 4 1.00None
Salivary gland26 ± 23 of 4 3.75Up
Crop4 ± 11 of 4 0.60None
Midgut17 ± 33 of 4 2.50Up
Tubule6 ± 00 of 4 0.90Down
Hindgut9 ± 20 of 4 1.40None
Heart4 ± 20 of 4 0.63None
Fat body11 ± 22 of 4 1.58None
Ovary5 ± 10 of 4 0.70None
Testis5 ± 00 of 4 0.80None
Male accessory glands9 ± 31 of 4 1.30None
Virgin spermatheca8 ± 21 of 4 1.19None
Mated spermatheca6 ± 10 of 4 0.88None
Adult carcass11 ± 20 of 4 1.60None
Larval CNS4 ± 20 of 4 0.65None
Larval Salivary gland6 ± 10 of 4 0.89None
Larval midgut7 ± 10 of 4 1.04None
Larval tubule7 ± 10 of 4 1.00None
Larval hindgut9 ± 13 of 4 1.41None
Larval fat body4 ± 10 of 4 0.60None
Larval trachea5 ± 20 of 4 0.80None
Larval carcass10 ± 10 of 4 1.50None
S2 cells (growing)7 ± 11 of 4 1.03None
Whole fly7 ± 20 of 4

Looking for FBgn0086378. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime