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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086442 through 18771 annotations produced 1 hits



mind bomb 2 (mib2):

Annotation Number : CG17492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086442
Gbrowse : chr2L:19034443-19041541 (+) // 100.0 //
Probeset : 1640497_at
Accessions : protein= NP_609933;, nucleotide= NM_136089;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030018 // Z disc // inferred from direct assay /// 0031430 // M
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0086442.
Homophila reports that CG17492 is a close match (6e-11) to human gene ESPN (NP_113663), a gene associated with Deafness, autosomal recessive 36, 609006 (3);Deafness, neurosensory, without vestibular involvement, autosomal dominant (3).
VDRC has 3 RNAi stocks for FBgn0086442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain471 ± 74 of 4 1.30Up
Head269 ± 124 of 4 0.80Down
Eye319 ± 164 of 4 0.90None
Thoracicoabdominal ganglion543 ± 104 of 4 1.50Up
Salivary gland221 ± 84 of 4 0.62Down
Crop327 ± 104 of 4 0.90None
Midgut202 ± 84 of 4 0.60Down
Tubule262 ± 114 of 4 0.70Down
Hindgut242 ± 54 of 4 0.70Down
Heart263 ± 124 of 4 0.74Down
Fat body123 ± 104 of 4 0.34Down
Ovary440 ± 164 of 4 1.20Up
Testis1269 ± 214 of 4 3.60Up
Male accessory glands132 ± 54 of 4 0.40Down
Virgin spermatheca268 ± 74 of 4 0.75Down
Mated spermatheca319 ± 114 of 4 0.89None
Adult carcass237 ± 74 of 4 0.70Down
Larval CNS315 ± 94 of 4 0.89None
Larval Salivary gland214 ± 44 of 4 0.60Down
Larval midgut210 ± 94 of 4 0.59Down
Larval tubule190 ± 74 of 4 0.50Down
Larval hindgut177 ± 54 of 4 0.50Down
Larval fat body294 ± 684 of 4 0.80None
Larval trachea289 ± 194 of 4 0.81None
Larval carcass222 ± 84 of 4 0.62Down
S2 cells (growing)447 ± 104 of 4 1.25Up
Whole fly357 ± 254 of 4

Looking for FBgn0086442. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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