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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086443 through 18771 annotations produced 1 hits



Asparaginyl-tRNA synthetase (Aats-asn):

Annotation Number : CG10687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086443
Gbrowse : chr2L:19129863-19131952 (-) // 100.0 //
Probeset : 1624475_at
Accessions : protein= NP_609948;, nucleotide= NM_136104;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0086443.
BioGrid reports that CG10687 interacts with CG33193 .
TRiP has 1 RNAi stocks for FBgn0086443 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086443 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 ± 34 of 4 0.70Down
Head264 ± 164 of 4 0.70Down
Eye208 ± 264 of 4 0.54Down
Thoracicoabdominal ganglion284 ± 64 of 4 0.70Down
Salivary gland538 ± 334 of 4 1.40Up
Crop347 ± 124 of 4 0.90None
Midgut441 ± 224 of 4 1.10None
Tubule547 ± 774 of 4 1.40Up
Hindgut268 ± 124 of 4 0.70Down
Heart186 ± 74 of 4 0.48Down
Fat body300 ± 224 of 4 0.78Down
Ovary519 ± 174 of 4 1.40Up
Testis142 ± 64 of 4 0.40Down
Male accessory glands552 ± 104 of 4 1.40Up
Virgin spermatheca375 ± 94 of 4 0.98None
Mated spermatheca447 ± 244 of 4 1.16None
Adult carcass271 ± 84 of 4 0.70Down
Larval CNS395 ± 284 of 4 1.03None
Larval Salivary gland1049 ± 284 of 4 2.73Up
Larval midgut273 ± 34 of 4 0.71Down
Larval tubule306 ± 84 of 4 0.80None
Larval hindgut254 ± 24 of 4 0.66Down
Larval fat body282 ± 214 of 4 0.70Down
Larval trachea375 ± 664 of 4 0.98None
Larval carcass464 ± 144 of 4 1.21None
S2 cells (growing)1254 ± 354 of 4 3.26Up
Whole fly384 ± 264 of 4

Looking for FBgn0086443. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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