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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0086445 through 18771 annotations produced 1 hits

CG10563 (l(2)37Cd):

Annotation Number : CG10563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086445
Gbrowse : chr2L:19127261-19129326 (+) // 100.0 //
Probeset : 1634729_at
Accessions : protein= NP_609947;, nucleotide= NM_136103;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0086445.
VDRC has 1 RNAi stocks for FBgn0086445 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 24 of 4 0.80Down
Head47 54 of 4 0.60Down
Eye31 34 of 4 0.37Down
Thoracicoabdominal ganglion64 44 of 4 0.80Down
Salivary gland35 43 of 4 0.41Down
Crop58 44 of 4 0.70Down
Midgut39 44 of 4 0.50Down
Tubule31 24 of 4 0.40Down
Hindgut38 24 of 4 0.40Down
Heart22 24 of 4 0.26Down
Fat body27 34 of 4 0.32Down
Ovary224 114 of 4 2.60Up
Testis43 14 of 4 0.50Down
Male accessory glands30 24 of 4 0.40Down
Virgin spermatheca18 14 of 4 0.22Down
Mated spermatheca31 14 of 4 0.37Down
Adult carcass29 24 of 4 0.30Down
Larval CNS73 34 of 4 0.85Down
Larval Salivary gland34 24 of 4 0.40Down
Larval midgut34 14 of 4 0.40Down
Larval tubule46 24 of 4 0.50Down
Larval hindgut34 34 of 4 0.40Down
Larval fat body27 24 of 4 0.30Down
Larval trachea31 14 of 4 0.37Down
Larval carcass30 14 of 4 0.35Down
S2 cells (growing)101 34 of 4 1.18Up
Whole fly85 24 of 4

Looking for FBgn0086445. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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