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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086451 through 18771 annotations produced 1 hits



CG10805 (l(2)k09022):

Annotation Number : CG10805
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086451
Gbrowse : chr2L:6854169-6860864 (+) // 100.0 //
Probeset : 1630466_at
Accessions : protein= NP_609079;, nucleotide= NM_135235;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0086451.
BioGrid reports that CG10805 interacts with CG5216 .
VDRC has 1 RNAi stocks for FBgn0086451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.20Down
Head46 24 of 4 0.30Down
Eye40 34 of 4 0.27Down
Thoracicoabdominal ganglion32 33 of 4 0.20Down
Salivary gland85 34 of 4 0.58Down
Crop63 14 of 4 0.40Down
Midgut96 53 of 4 0.70Down
Tubule58 74 of 4 0.40Down
Hindgut59 24 of 4 0.40Down
Heart61 34 of 4 0.42Down
Fat body73 84 of 4 0.50Down
Ovary303 64 of 4 2.10Up
Testis21 14 of 4 0.10Down
Male accessory glands151 114 of 4 1.00None
Virgin spermatheca75 54 of 4 0.51Down
Mated spermatheca91 54 of 4 0.62Down
Adult carcass62 34 of 4 0.40Down
Larval CNS151 84 of 4 1.03None
Larval Salivary gland132 134 of 4 0.90None
Larval midgut88 54 of 4 0.60Down
Larval tubule36 24 of 4 0.20Down
Larval hindgut95 124 of 4 0.65Down
Larval fat body27 22 of 4 0.20Down
Larval trachea195 294 of 4 1.33Up
Larval carcass143 294 of 4 0.98None
S2 cells (growing)194 24 of 4 1.32Up
Whole fly147 44 of 4

Looking for FBgn0086451. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime