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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086472 through 18771 annotations produced 1 hits



Minute (3) S32 (RpS25):

Annotation Number : CG6684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086472
Gbrowse : chr3R:7040941-7042037 (-) // 100.0 //
Probeset : 1627774_a_at
Accessions : protein= NP_524315; /// NP_650049; /// NP_731544;, nucleotide= NM_079591; /// NM_141792; /// NM_169376;
Pathway : 0005840 // ribosome // non-traceable author statement /// 0005840 // ribosome // inferred from electronic annotation ///
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0086472.
BioGrid reports that CG6684 interacts with CG7755 CG7954 CG9520 CG3936 CG1849 .
VDRC has 3 RNAi stocks for FBgn0086472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4328 ± 1124 of 4 0.80None
Head5967 ± 2344 of 4 1.10None
Eye9152 ± 1354 of 4 1.74Up
Thoracicoabdominal ganglion5787 ± 1564 of 4 1.10None
Salivary gland17038 ± 7714 of 4 3.23Up
Crop7652 ± 4844 of 4 1.50Up
Midgut6883 ± 1264 of 4 1.30Up
Tubule6554 ± 514 of 4 1.20Up
Hindgut6502 ± 1444 of 4 1.20Up
Heart8711 ± 6994 of 4 1.65Up
Fat body6424 ± 9494 of 4 1.22None
Ovary4206 ± 764 of 4 0.80None
Testis2205 ± 264 of 4 0.40Down
Male accessory glands11745 ± 3884 of 4 2.20Up
Virgin spermatheca6543 ± 2714 of 4 1.24Up
Mated spermatheca6715 ± 3304 of 4 1.27Up
Adult carcass7779 ± 4054 of 4 1.50Up
Larval CNS3095 ± 2514 of 4 0.59Down
Larval Salivary gland9118 ± 5174 of 4 1.73Up
Larval midgut6410 ± 1894 of 4 1.22Up
Larval tubule6405 ± 784 of 4 1.20Up
Larval hindgut5218 ± 774 of 4 0.99None
Larval fat body10030 ± 10614 of 4 1.90Up
Larval trachea7642 ± 4404 of 4 1.45Up
Larval carcass5720 ± 4814 of 4 1.08None
S2 cells (growing)5215 ± 944 of 4 0.99None
Whole fly5273 ± 3634 of 4

Looking for FBgn0086472. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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