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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086519 through 18771 annotations produced 1 hits



CG9070 (Cpr47Eg):

Annotation Number : CG9070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086519
Gbrowse : chr2R:7165455-7165946 (-) // 100.0 //
Probeset : 1641588_at
Accessions : protein= NP_610661;, nucleotide= NM_136817;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005215
FlyMine data for FBgn0086519.
VDRC has 3 RNAi stocks for FBgn0086519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10None
Head6 01 of 4 0.20None
Eye7 31 of 4 0.22None
Thoracicoabdominal ganglion8 10 of 4 0.20None
Salivary gland15 20 of 4 0.46None
Crop6 20 of 4 0.20None
Midgut1 00 of 4 0.00None
Tubule5 10 of 4 0.20Down
Hindgut6 10 of 4 0.20None
Heart3 10 of 4 0.09None
Fat body6 30 of 4 0.20None
Ovary3 10 of 4 0.10None
Testis9 22 of 4 0.30None
Male accessory glands15 10 of 4 0.40None
Virgin spermatheca13 13 of 4 0.41None
Mated spermatheca8 20 of 4 0.25None
Adult carcass16 40 of 4 0.50None
Larval CNS8 40 of 4 0.24None
Larval Salivary gland10 30 of 4 0.32None
Larval midgut6 20 of 4 0.19None
Larval tubule10 10 of 4 0.30None
Larval hindgut61 214 of 4 1.81None
Larval fat body13 30 of 4 0.40None
Larval trachea242 2154 of 4 7.13None
Larval carcass4020 5134 of 4118.08Up
S2 cells (growing)7 00 of 4 0.23None
Whole fly34 162 of 4

Looking for FBgn0086519. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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