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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086532 through 18771 annotations produced 1 hits



Serine palmitoyltransferase subunit I (Spt-I):

Annotation Number : CG4016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086532
Gbrowse : chr2R:9056004-9058043 (+) // 100.0 //
Probeset : 1625352_s_at
Accessions : protein= NP_610842; /// NP_725255; /// NP_725256;, nucleotide= NM_136998; /// NM_165967; /// NM_165968;
Pathway : 0017059 // serine C-palmitoyltransferase complex // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004758 // serine C-palmitoyltransferase activ
FlyMine data for FBgn0086532.
Homophila reports that CG4016 is a close match (5e-20) to human gene HSAN;HSN1;LBC1;SPT1;SPTLC1 (NP_847894), a gene associated with Neuropathy, hereditary sensory and autonomic, type 1, 162400 (3).
VDRC has 3 RNAi stocks for FBgn0086532 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain265 64 of 4 1.80Up
Head179 34 of 4 1.20Up
Eye206 174 of 4 1.39Up
Thoracicoabdominal ganglion393 114 of 4 2.60Up
Salivary gland246 154 of 4 1.65Up
Crop148 44 of 4 1.00None
Midgut360 174 of 4 2.40Up
Tubule238 194 of 4 1.60Up
Hindgut238 64 of 4 1.60Up
Heart89 64 of 4 0.60Down
Fat body132 174 of 4 0.89None
Ovary220 44 of 4 1.50Up
Testis41 14 of 4 0.30Down
Male accessory glands206 104 of 4 1.40Up
Virgin spermatheca91 14 of 4 0.62Down
Mated spermatheca98 54 of 4 0.66Down
Adult carcass91 54 of 4 0.60Down
Larval CNS272 174 of 4 1.83Up
Larval Salivary gland161 74 of 4 1.08None
Larval midgut349 174 of 4 2.35Up
Larval tubule281 44 of 4 1.90Up
Larval hindgut340 154 of 4 2.29Up
Larval fat body124 174 of 4 0.80None
Larval trachea143 164 of 4 0.96None
Larval carcass85 54 of 4 0.57Down
S2 cells (growing)478 54 of 4 3.22Up
Whole fly148 74 of 4

Looking for FBgn0086532. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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