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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086611 through 18771 annotations produced 1 hits



Larval cuticle protein (Lcp65Ag3):

Annotation Number : CG18779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086611
Gbrowse : chr3L:6123484-6124086 (-) // 100.0 //
Probeset : 1627388_at
Accessions : protein= NP_652662;, nucleotide= NM_144405;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0086611.
BioGrid reports that CG18779 interacts with CG12907 CG16978 CG2082 CG5618 CG6467 CG7285 CG8232 .
VDRC has 3 RNAi stocks for FBgn0086611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00None
Head7 ± 02 of 4 0.10None
Eye3 ± 12 of 4 0.04None
Thoracicoabdominal ganglion0 ± 00 of 4 0.00None
Salivary gland5 ± 30 of 4 0.07None
Crop5 ± 00 of 4 0.10None
Midgut1 ± 10 of 4 0.00None
Tubule3 ± 00 of 4 0.00Down
Hindgut5 ± 31 of 4 0.10None
Heart3 ± 10 of 4 0.04None
Fat body2 ± 10 of 4 0.03None
Ovary1 ± 00 of 4 0.00None
Testis1 ± 00 of 4 0.00None
Male accessory glands1 ± 00 of 4 0.00None
Virgin spermatheca3 ± 10 of 4 0.04None
Mated spermatheca4 ± 00 of 4 0.06None
Adult carcass14 ± 20 of 4 0.20None
Larval CNS2 ± 10 of 4 0.03None
Larval Salivary gland6 ± 10 of 4 0.08None
Larval midgut1 ± 00 of 4 0.02None
Larval tubule2 ± 10 of 4 0.00None
Larval hindgut208 ± 654 of 4 2.74None
Larval fat body5 ± 10 of 4 0.10None
Larval trachea436 ± 2864 of 4 5.74None
Larval carcass3871 ± 4074 of 450.91Up
S2 cells (growing)1 ± 00 of 4 0.02None
Whole fly76 ± 423 of 4

Looking for FBgn0086611. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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