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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086655 through 18771 annotations produced 2 hits



deformed (jing):

Annotation Number : CG9403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086655
Gbrowse : chr2R:2501283-2506901 (+) // 100.0 //
Probeset : 1636066_s_at
Accessions : protein= NP_001097197; /// NP_001097198; /// NP_001097199; /// NP_001097200; /// NP_995749;, nucleotide= NM_001103727; /// NM_001103728; /// NM_001103729; /// NM_001103730; /// NM_206027; /// NM_206027;
Pathway : maxillary segment // inferred from expression pattern /// 0007382 // specification of segmental identity
Interpro : maxillary segment // inferred from genetic interaction /// 0007411 // axon guidance // inferred from mutant phenotype /
FlyMine data for FBgn0086655.
TRiP has 2 RNAi stocks for FBgn0086655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 04 of 4 0.60Down
Head5 00 of 4 0.20Down
Eye7 02 of 4 0.27Down
Thoracicoabdominal ganglion6 12 of 4 0.20Down
Salivary gland23 11 of 4 0.86None
Crop13 02 of 4 0.50Down
Midgut16 14 of 4 0.60Down
Tubule7 10 of 4 0.30Down
Hindgut10 22 of 4 0.40Down
Heart4 10 of 4 0.16Down
Fat body3 10 of 4 0.13Down
Ovary72 34 of 4 2.70Up
Testis19 04 of 4 0.70Down
Male accessory glands6 20 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.12Down
Mated spermatheca6 10 of 4 0.25Down
Adult carcass7 30 of 4 0.30Down
Larval CNS69 84 of 4 2.61Up
Larval Salivary gland12 23 of 4 0.46Down
Larval midgut7 20 of 4 0.28Down
Larval tubule18 33 of 4 0.70None
Larval hindgut11 04 of 4 0.42Down
Larval fat body32 34 of 4 1.20None
Larval trachea13 14 of 4 0.52Down
Larval carcass16 22 of 4 0.60Down
S2 cells (growing)25 14 of 4 0.96None
Whole fly26 14 of 4



deformed (jing):

Annotation Number : CG9397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086655
Gbrowse : chr2R:2390272-2391223 (+) // 100.0 //
Probeset : 1628528_at
Accessions : protein= NP_001097197; /// NP_001097198; /// NP_001097199; /// NP_001097200; /// NP_995749;, nucleotide= NM_001103727; /// NM_001103728; /// NM_001103729; /// NM_001103730; /// NM_206027; /// NM_206027;
Pathway : maxillary segment // inferred from expression pattern /// 0007382 // specification of segmental identity
Interpro : maxillary segment // inferred from genetic interaction /// 0007411 // axon guidance // inferred from mutant phenotype /
FlyMine data for FBgn0086655.
BioGrid reports that CG9397 interacts with CG8355 CG6883 CG7771 CG4354 CG11987 CG32134 .
TRiP has 2 RNAi stocks for FBgn0086655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.80None
Head4 11 of 4 1.00None
Eye3 10 of 4 0.81None
Thoracicoabdominal ganglion6 01 of 4 1.30None
Salivary gland13 61 of 4 2.79None
Crop6 02 of 4 1.40None
Midgut5 20 of 4 1.20None
Tubule4 00 of 4 0.90None
Hindgut6 11 of 4 1.40None
Heart7 11 of 4 1.46None
Fat body7 53 of 4 1.54None
Ovary4 10 of 4 0.90None
Testis2 00 of 4 0.60None
Male accessory glands7 01 of 4 1.60None
Virgin spermatheca7 10 of 4 1.60None
Mated spermatheca4 11 of 4 0.99None
Adult carcass10 31 of 4 2.20None
Larval CNS3 11 of 4 0.73None
Larval Salivary gland9 11 of 4 1.96Up
Larval midgut3 10 of 4 0.78None
Larval tubule6 01 of 4 1.40None
Larval hindgut3 10 of 4 0.70None
Larval fat body13 31 of 4 2.80None
Larval trachea5 21 of 4 1.23None
Larval carcass5 01 of 4 1.20None
S2 cells (growing)5 01 of 4 1.14None
Whole fly4 10 of 4

Looking for FBgn0086655. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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