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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086657 through 18771 annotations produced 1 hits



IkappaB kinase-like 2 (ik2):

Annotation Number : CG2615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086657
Gbrowse : chr2L:20676233-20679308 (+) // 100.0 //
Probeset : 1640036_a_at
Accessions : protein= NP_610048; /// NP_724278;, nucleotide= NM_136204; /// NM_165337;
Pathway : open tracheal system // inferred from mutant phenotype /// 0043280 // positive regulation of caspase activity // inferr
Interpro : 0008385 // IkappaB kinase complex // non-traceable author statement
FlyMine data for FBgn0086657.
Homophila reports that CG2615 is a close match (3e-11) to human gene CAPB;DRT;EPHB2;EPHT3;ERK;PCBC (NP_059145), a gene associated with Prostate cancer, progression and metastasis of, 603688 (3).
BioGrid reports that CG2615 interacts with CG6156 .
TRiP has 2 RNAi stocks for FBgn0086657 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 24 of 4 1.10None
Head22 23 of 4 0.90None
Eye28 24 of 4 1.08None
Thoracicoabdominal ganglion41 44 of 4 1.60Up
Salivary gland27 34 of 4 1.06None
Crop39 44 of 4 1.50None
Midgut19 30 of 4 0.80None
Tubule17 04 of 4 0.70Down
Hindgut25 24 of 4 1.00None
Heart23 34 of 4 0.90None
Fat body49 54 of 4 1.89Up
Ovary73 14 of 4 2.80Up
Testis10 14 of 4 0.40Down
Male accessory glands27 34 of 4 1.10None
Virgin spermatheca21 24 of 4 0.81None
Mated spermatheca30 24 of 4 1.18None
Adult carcass16 12 of 4 0.60None
Larval CNS45 54 of 4 1.73Up
Larval Salivary gland27 34 of 4 1.07None
Larval midgut17 40 of 4 0.68None
Larval tubule27 14 of 4 1.10None
Larval hindgut18 14 of 4 0.70None
Larval fat body50 64 of 4 1.90Up
Larval trachea25 24 of 4 0.97None
Larval carcass27 34 of 4 1.06None
S2 cells (growing)20 14 of 4 0.78None
Whole fly26 44 of 4

Looking for FBgn0086657. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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