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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086673 through 18771 annotations produced 1 hits



CG33312 (CG13272):

Annotation Number : CG13272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086673
Gbrowse : chr2L:16811664-16815793 (+) // 100.0 //
Probeset : 1640494_at
Accessions : protein= NP_609811;, nucleotide= NM_135967;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086673.
VDRC has 1 RNAi stocks for FBgn0086673 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 1.20None
Head4 10 of 4 1.20None
Eye3 10 of 4 1.01None
Thoracicoabdominal ganglion3 10 of 4 1.00None
Salivary gland19 40 of 4 4.96Up
Crop5 00 of 4 1.40None
Midgut5 10 of 4 1.50None
Tubule2 00 of 4 0.60Down
Hindgut6 10 of 4 1.80None
Heart7 01 of 4 1.88None
Fat body9 20 of 4 2.56Up
Ovary2 00 of 4 0.70None
Testis3 00 of 4 0.80None
Male accessory glands9 20 of 4 2.40None
Virgin spermatheca5 21 of 4 1.39None
Mated spermatheca5 10 of 4 1.29None
Adult carcass2 00 of 4 0.70None
Larval CNS4 20 of 4 1.09None
Larval Salivary gland11 10 of 4 2.94Up
Larval midgut12 10 of 4 3.29Up
Larval tubule3 00 of 4 1.00None
Larval hindgut4 10 of 4 1.09None
Larval fat body6 20 of 4 1.60None
Larval trachea24 54 of 4 6.38Up
Larval carcass8 11 of 4 2.12None
S2 cells (growing)3 10 of 4 0.93None
Whole fly3 10 of 4

Looking for FBgn0086673. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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