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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086675 through 18771 annotations produced 1 hits



Found in NEurons (fne):

Annotation Number : CG4396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086675
Gbrowse : chrX:12836632-12839828 (+) // 99.45 //
Probeset : 1633852_at
Accessions : protein= NP_001096965; /// NP_572842;, nucleotide= NM_001103495; /// NM_132614;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0086675.
TRiP has 1 RNAi stocks for FBgn0086675 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086675 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain993 174 of 422.10Up
Head206 244 of 4 4.60Up
Eye134 204 of 4 2.98Up
Thoracicoabdominal ganglion1101 204 of 424.50Up
Salivary gland4 10 of 4 0.10Down
Crop9 11 of 4 0.20Down
Midgut4 11 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart7 22 of 4 0.16Down
Fat body14 83 of 4 0.33Down
Ovary1 00 of 4 0.00Down
Testis5 01 of 4 0.10Down
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca22 24 of 4 0.50Down
Mated spermatheca31 104 of 4 0.69None
Adult carcass20 24 of 4 0.50Down
Larval CNS1170 544 of 426.03Up
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut2 10 of 4 0.05Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.07Down
Larval fat body7 00 of 4 0.20Down
Larval trachea7 22 of 4 0.18Down
Larval carcass9 04 of 4 0.22Down
S2 cells (growing)3 01 of 4 0.07Down
Whole fly45 44 of 4

Looking for FBgn0086675. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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