FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086680 through 18771 annotations produced 2 hits

chr3L:6783259-6787636 (+) // 100.0 // (ventral veins lacking):

Annotation Number : CG10037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628729_at
Accessions : protein= , nucleotide= NP_001163355; /// NP_523948;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG10037 is a close match (5e-20) to human gene POU6F2;WT5;WTSL (NP_009183), a gene associated with {Wilms tumor susceptibility-5}, 601583 (3).
BioGrid reports that CG10037 interacts with CG15080 CG1567 CG6378 CG9151 CG5893 CG10079 CG10079 CG9151 CG9151 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	68 ± 8	4 of 4	1.60	None
Head	39 ± 3	4 of 4	0.90	None
Eye	12 ± 2	3 of 4	0.29	Down
Thoracicoabdominal ganglion	58 ± 3	4 of 4	1.40	None
Salivary gland	14 ± 1	0 of 4	0.33	Down
Crop	69 ± 5	4 of 4	1.70	Up
Midgut	3 ± 1	3 of 4	0.10	Down
Tubule	5 ± 0	1 of 4	0.10	Down
Hindgut	17 ± 1	4 of 4	0.40	Down
Heart	114 ± 20	4 of 4	2.73	Up
Fat body	344 ± 45	4 of 4	8.23	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	0 ± 0	1 of 4	0.00	Down
Male accessory glands	14 ± 2	3 of 4	0.30	Down
Virgin spermatheca	7 ± 0	3 of 4	0.17	Down
Mated spermatheca	11 ± 2	3 of 4	0.26	Down
Adult carcass	113 ± 13	4 of 4	2.70	Up
Larval CNS	84 ± 20	4 of 4	2.03	Up
Larval Salivary gland	6 ± 1	1 of 4	0.15	Down
Larval midgut	4 ± 0	2 of 4	0.12	Down
Larval tubule	4 ± 0	0 of 4	0.10	Down
Larval hindgut	46 ± 4	4 of 4	1.12	None
Larval fat body	4 ± 1	0 of 4	0.10	Down
Larval trachea	115 ± 31	4 of 4	2.76	Up
Larval carcass	97 ± 5	4 of 4	2.33	Up
S2 cells (growing)	0 ± 0	0 of 4	0.00	Down
Whole fly	41 ± 6	4 of 4

ventral veins lacking (vvl):

Annotation Number : S.C3L000862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086680
Gbrowse : chr3L:6785395-6786067 (+) // 100.0 //
Probeset : 1626338_s_at
Accessions : protein= NP_001163355; /// NP_523948;, nucleotide= NM_001169884; /// NM_079224;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007420 // brain development // inferred from mutant phenotype ///
FlyMine data for FBgn0086680.
TRiP has 1 RNAi stocks for FBgn0086680 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086680 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	3 of 4	1.40	None
Head	8 ± 3	1 of 4	0.70	None
Eye	8 ± 2	2 of 4	0.76	None
Thoracicoabdominal ganglion	15 ± 4	2 of 4	1.40	None
Salivary gland	9 ± 2	0 of 4	0.88	None
Crop	20 ± 2	4 of 4	1.80	Up
Midgut	2 ± 1	0 of 4	0.20	Down
Tubule	4 ± 1	0 of 4	0.40	Down
Hindgut	5 ± 2	0 of 4	0.50	None
Heart	91 ± 8	4 of 4	8.24	Up
Fat body	30 ± 14	3 of 4	2.79	None
Ovary	2 ± 1	0 of 4	0.20	Down
Testis	5 ± 0	1 of 4	0.50	Down
Male accessory glands	2 ± 0	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	0 of 4	0.32	Down
Mated spermatheca	5 ± 0	0 of 4	0.47	Down
Adult carcass	49 ± 10	4 of 4	4.50	Up
Larval CNS	6 ± 1	0 of 4	0.55	Down
Larval Salivary gland	3 ± 1	0 of 4	0.33	Down
Larval midgut	6 ± 1	0 of 4	0.55	None
Larval tubule	2 ± 0	0 of 4	0.20	Down
Larval hindgut	5 ± 1	0 of 4	0.50	Down
Larval fat body	1 ± 0	0 of 4	0.20	Down
Larval trachea	79 ± 7	4 of 4	7.18	Up
Larval carcass	8 ± 2	0 of 4	0.75	None
S2 cells (growing)	1 ± 0	0 of 4	0.15	Down
Whole fly	11 ± 1	3 of 4

Looking for FBgn0086680. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720