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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086681 through 18771 annotations produced 1 hits



CG31801 (Mst36Fa):

Annotation Number : CG31801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086681
Gbrowse : chr2L:18675523-18676932 (-) // 100.0 //
Probeset : 1624116_at
Accessions : protein= NP_724121;, nucleotide= NM_165259;
FlyMine data for FBgn0086681.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 04 of 4 0.30Down
Head9 ± 10 of 4 0.30Down
Eye8 ± 12 of 4 0.24Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.20Down
Salivary gland84 ± 94 of 4 2.52Up
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule14 ± 11 of 4 0.40Down
Hindgut28 ± 04 of 4 0.80None
Heart2 ± 10 of 4 0.08Down
Fat body17 ± 43 of 4 0.51Down
Ovary2 ± 00 of 4 0.10Down
Testis450 ± 174 of 413.40Up
Male accessory glands57 ± 94 of 4 1.70None
Virgin spermatheca14 ± 11 of 4 0.43Down
Mated spermatheca12 ± 20 of 4 0.37Down
Adult carcass8 ± 40 of 4 0.30Down
Larval CNS14 ± 54 of 4 0.42Down
Larval Salivary gland43 ± 54 of 4 1.28None
Larval midgut5 ± 10 of 4 0.15Down
Larval tubule38 ± 14 of 4 1.10None
Larval hindgut10 ± 00 of 4 0.32Down
Larval fat body57 ± 264 of 4 1.70None
Larval trachea6 ± 10 of 4 0.18Down
Larval carcass8 ± 00 of 4 0.24Down
S2 cells (growing)11 ± 01 of 4 0.33Down
Whole fly33 ± 34 of 4

Looking for FBgn0086681. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime