FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086687 through 18771 annotations produced 1 hits

desaturase1 (desat1):

Annotation Number : CG5887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086687
Gbrowse : chr3R:8265321-8273338 (+) // 100.0 //
Probeset : 1628213_s_at
Accessions : protein= NP_652731; /// NP_731709; /// NP_731710; /// NP_731711; /// NP_731712;, nucleotide= NM_144474; /// NM_169465; /// NM_169466; /// NM_169467; /// NM_169468;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0016021 // integral to membrane // inferred from electronic
Interpro : "0004768 // stearoyl-CoA 9-desaturase activity // inferred from sequence or structural similarity /// 0004768 // stearoy
FlyMine data for FBgn0086687.
BioGrid reports that CG5887 interacts with CG7285 CG8232 CG8784 .
TRiP has 2 RNAi stocks for FBgn0086687 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086687 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1159 ± 70	4 of 4	0.60	Down
Head	2832 ± 109	4 of 4	1.50	Up
Eye	1590 ± 149	4 of 4	0.82	None
Thoracicoabdominal ganglion	1121 ± 36	4 of 4	0.60	Down
Salivary gland	699 ± 67	4 of 4	0.36	Down
Crop	2266 ± 56	4 of 4	1.20	None
Midgut	1197 ± 43	4 of 4	0.60	Down
Tubule	1600 ± 73	4 of 4	0.80	Down
Hindgut	2592 ± 72	4 of 4	1.30	Up
Heart	4007 ± 251	4 of 4	2.07	Up
Fat body	6646 ± 637	4 of 4	3.43	Up
Ovary	964 ± 30	4 of 4	0.50	Down
Testis	459 ± 17	4 of 4	0.20	Down
Male accessory glands	1743 ± 66	4 of 4	0.90	None
Virgin spermatheca	5958 ± 176	4 of 4	3.07	Up
Mated spermatheca	5695 ± 282	4 of 4	2.94	Up
Adult carcass	3862 ± 36	4 of 4	2.00	Up
Larval CNS	1146 ± 62	4 of 4	0.59	Down
Larval Salivary gland	1365 ± 79	4 of 4	0.70	Down
Larval midgut	3093 ± 93	4 of 4	1.59	Up
Larval tubule	671 ± 20	4 of 4	0.30	Down
Larval hindgut	2075 ± 74	4 of 4	1.07	None
Larval fat body	2484 ± 211	4 of 4	1.30	None
Larval trachea	994 ± 72	4 of 4	0.51	Down
Larval carcass	1099 ± 106	4 of 4	0.57	Down
S2 cells (growing)	2128 ± 80	4 of 4	1.10	None
Whole fly	1940 ± 119	4 of 4

Looking for FBgn0086687. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720