FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086690 through 18771 annotations produced 3 hits

lethal (3) s2172 (cp309):

Annotation Number : CG13459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15073976-15077727 (-) // 100.0 //
Probeset : 1632523_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.40	None
Head	4 ± 1	1 of 4	1.00	None
Eye	2 ± 1	0 of 4	0.62	None
Thoracicoabdominal ganglion	4 ± 1	1 of 4	1.00	None
Salivary gland	11 ± 1	2 of 4	2.38	Up
Crop	6 ± 1	0 of 4	1.30	None
Midgut	4 ± 1	0 of 4	0.80	None
Tubule	1 ± 0	0 of 4	0.20	Down
Hindgut	3 ± 0	0 of 4	0.70	None
Heart	3 ± 1	0 of 4	0.82	None
Fat body	4 ± 2	1 of 4	0.91	None
Ovary	3 ± 1	0 of 4	0.60	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	6 ± 2	0 of 4	1.40	None
Virgin spermatheca	4 ± 1	0 of 4	0.88	None
Mated spermatheca	2 ± 1	1 of 4	0.61	None
Adult carcass	11 ± 1	0 of 4	2.50	Up
Larval CNS	1 ± 0	0 of 4	0.39	None
Larval Salivary gland	6 ± 2	1 of 4	1.25	None
Larval midgut	1 ± 0	0 of 4	0.35	None
Larval tubule	3 ± 1	0 of 4	0.60	None
Larval hindgut	2 ± 1	0 of 4	0.56	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	3 ± 0	0 of 4	0.68	None
Larval carcass	2 ± 0	0 of 4	0.54	None
S2 cells (growing)	7 ± 1	2 of 4	1.57	None
Whole fly	4 ± 2	1 of 4

lethal (3) s2172 (cp309):

Annotation Number : CG6735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15059340-15065251 (-) // 99.9 //
Probeset : 1634009_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	281 ± 3	4 of 4	1.40	Up
Head	250 ± 9	4 of 4	1.30	Up
Eye	114 ± 9	4 of 4	0.58	Down
Thoracicoabdominal ganglion	261 ± 4	4 of 4	1.30	Up
Salivary gland	74 ± 6	4 of 4	0.37	Down
Crop	174 ± 4	4 of 4	0.90	None
Midgut	52 ± 4	4 of 4	0.30	Down
Tubule	34 ± 1	4 of 4	0.20	Down
Hindgut	91 ± 2	4 of 4	0.50	Down
Heart	210 ± 3	4 of 4	1.06	None
Fat body	246 ± 46	4 of 4	1.24	None
Ovary	194 ± 2	4 of 4	1.00	None
Testis	39 ± 1	4 of 4	0.20	Down
Male accessory glands	132 ± 8	4 of 4	0.70	Down
Virgin spermatheca	237 ± 4	4 of 4	1.19	None
Mated spermatheca	175 ± 5	4 of 4	0.88	None
Adult carcass	547 ± 20	4 of 4	2.80	Up
Larval CNS	286 ± 17	4 of 4	1.44	Up
Larval Salivary gland	103 ± 3	4 of 4	0.52	Down
Larval midgut	60 ± 5	4 of 4	0.30	Down
Larval tubule	43 ± 2	4 of 4	0.20	Down
Larval hindgut	70 ± 3	4 of 4	0.36	Down
Larval fat body	279 ± 17	4 of 4	1.40	Up
Larval trachea	60 ± 6	4 of 4	0.30	Down
Larval carcass	188 ± 12	4 of 4	0.95	None
S2 cells (growing)	231 ± 0	4 of 4	1.17	None
Whole fly	198 ± 14	4 of 4

lethal (3) s2172 (cp309):

Annotation Number : CG18648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15067394-15068947 (-) // 100.0 //
Probeset : 1635241_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 2	4 of 4	3.00	Up
Head	5 ± 1	2 of 4	1.30	None
Eye	2 ± 0	0 of 4	0.64	None
Thoracicoabdominal ganglion	11 ± 3	3 of 4	2.80	None
Salivary gland	5 ± 2	0 of 4	1.40	None
Crop	10 ± 1	4 of 4	2.60	Up
Midgut	1 ± 0	0 of 4	0.30	None
Tubule	4 ± 0	0 of 4	1.00	None
Hindgut	7 ± 1	2 of 4	1.70	None
Heart	8 ± 1	2 of 4	1.96	None
Fat body	12 ± 3	4 of 4	3.08	Up
Ovary	2 ± 0	0 of 4	0.60	None
Testis	4 ± 1	1 of 4	1.10	None
Male accessory glands	5 ± 1	0 of 4	1.20	None
Virgin spermatheca	6 ± 1	0 of 4	1.54	None
Mated spermatheca	6 ± 2	2 of 4	1.61	None
Adult carcass	17 ± 3	3 of 4	4.10	Up
Larval CNS	7 ± 3	3 of 4	1.69	None
Larval Salivary gland	6 ± 2	0 of 4	1.45	None
Larval midgut	2 ± 1	0 of 4	0.69	None
Larval tubule	4 ± 0	1 of 4	1.00	None
Larval hindgut	1 ± 0	1 of 4	0.44	None
Larval fat body	26 ± 2	4 of 4	6.40	Up
Larval trachea	5 ± 1	0 of 4	1.23	None
Larval carcass	2 ± 0	0 of 4	0.64	None
S2 cells (growing)	15 ± 0	4 of 4	3.83	Up
Whole fly	4 ± 1	1 of 4

Looking for FBgn0086690. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720