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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086690 through 18771 annotations produced 3 hits



lethal (3) s2172 (cp309):

Annotation Number : CG13459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15073976-15077727 (-) // 100.0 //
Probeset : 1632523_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head4 11 of 4 1.00None
Eye2 10 of 4 0.62None
Thoracicoabdominal ganglion4 11 of 4 1.00None
Salivary gland11 12 of 4 2.38Up
Crop6 10 of 4 1.30None
Midgut4 10 of 4 0.80None
Tubule1 00 of 4 0.20Down
Hindgut3 00 of 4 0.70None
Heart3 10 of 4 0.82None
Fat body4 21 of 4 0.91None
Ovary3 10 of 4 0.60None
Testis1 00 of 4 0.40None
Male accessory glands6 20 of 4 1.40None
Virgin spermatheca4 10 of 4 0.88None
Mated spermatheca2 11 of 4 0.61None
Adult carcass11 10 of 4 2.50Up
Larval CNS1 00 of 4 0.39None
Larval Salivary gland6 21 of 4 1.25None
Larval midgut1 00 of 4 0.35None
Larval tubule3 10 of 4 0.60None
Larval hindgut2 10 of 4 0.56None
Larval fat body1 00 of 4 0.30None
Larval trachea3 00 of 4 0.68None
Larval carcass2 00 of 4 0.54None
S2 cells (growing)7 12 of 4 1.57None
Whole fly4 21 of 4



lethal (3) s2172 (cp309):

Annotation Number : CG18648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15067394-15068947 (-) // 100.0 //
Probeset : 1635241_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 24 of 4 3.00Up
Head5 12 of 4 1.30None
Eye2 00 of 4 0.64None
Thoracicoabdominal ganglion11 33 of 4 2.80None
Salivary gland5 20 of 4 1.40None
Crop10 14 of 4 2.60Up
Midgut1 00 of 4 0.30None
Tubule4 00 of 4 1.00None
Hindgut7 12 of 4 1.70None
Heart8 12 of 4 1.96None
Fat body12 34 of 4 3.08Up
Ovary2 00 of 4 0.60None
Testis4 11 of 4 1.10None
Male accessory glands5 10 of 4 1.20None
Virgin spermatheca6 10 of 4 1.54None
Mated spermatheca6 22 of 4 1.61None
Adult carcass17 33 of 4 4.10Up
Larval CNS7 33 of 4 1.69None
Larval Salivary gland6 20 of 4 1.45None
Larval midgut2 10 of 4 0.69None
Larval tubule4 01 of 4 1.00None
Larval hindgut1 01 of 4 0.44None
Larval fat body26 24 of 4 6.40Up
Larval trachea5 10 of 4 1.23None
Larval carcass2 00 of 4 0.64None
S2 cells (growing)15 04 of 4 3.83Up
Whole fly4 11 of 4



lethal (3) s2172 (cp309):

Annotation Number : CG6735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086690
Gbrowse : chr3L:15059340-15065251 (-) // 99.9 //
Probeset : 1634009_at
Accessions : protein= NP_001027573; /// NP_001027574;, nucleotide= NM_001032401; /// NM_001032402;
Pathway : 0005813 // centrosome // non-traceable author statement
FlyMine data for FBgn0086690.
VDRC has 5 RNAi stocks for FBgn0086690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain281 34 of 4 1.40Up
Head250 94 of 4 1.30Up
Eye114 94 of 4 0.58Down
Thoracicoabdominal ganglion261 44 of 4 1.30Up
Salivary gland74 64 of 4 0.37Down
Crop174 44 of 4 0.90None
Midgut52 44 of 4 0.30Down
Tubule34 14 of 4 0.20Down
Hindgut91 24 of 4 0.50Down
Heart210 34 of 4 1.06None
Fat body246 464 of 4 1.24None
Ovary194 24 of 4 1.00None
Testis39 14 of 4 0.20Down
Male accessory glands132 84 of 4 0.70Down
Virgin spermatheca237 44 of 4 1.19None
Mated spermatheca175 54 of 4 0.88None
Adult carcass547 204 of 4 2.80Up
Larval CNS286 174 of 4 1.44Up
Larval Salivary gland103 34 of 4 0.52Down
Larval midgut60 54 of 4 0.30Down
Larval tubule43 24 of 4 0.20Down
Larval hindgut70 34 of 4 0.36Down
Larval fat body279 174 of 4 1.40Up
Larval trachea60 64 of 4 0.30Down
Larval carcass188 124 of 4 0.95None
S2 cells (growing)231 04 of 4 1.17None
Whole fly198 144 of 4

Looking for FBgn0086690. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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