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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086691 through 18771 annotations produced 1 hits



UK114 (UK114):

Annotation Number : CG15261
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086691
Gbrowse : chr2L:15274225-15275028 (-) // 100.0 //
Probeset : 1634890_at
Accessions : protein= NP_609747;, nucleotide= NM_135903;
FlyMine data for FBgn0086691.
BioGrid reports that CG15261 interacts with CG3911 CG9083 .
VDRC has 1 RNAi stocks for FBgn0086691 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 54 of 4 0.10Down
Head1224 ± 1154 of 4 2.30Up
Eye288 ± 544 of 4 0.55Down
Thoracicoabdominal ganglion93 ± 54 of 4 0.20Down
Salivary gland156 ± 114 of 4 0.30Down
Crop139 ± 54 of 4 0.30Down
Midgut754 ± 234 of 4 1.40Up
Tubule395 ± 304 of 4 0.80Down
Hindgut353 ± 174 of 4 0.70Down
Heart987 ± 634 of 4 1.89Up
Fat body1999 ± 1544 of 4 3.83Up
Ovary430 ± 64 of 4 0.80Down
Testis123 ± 44 of 4 0.20Down
Male accessory glands23 ± 24 of 4 0.00Down
Virgin spermatheca2350 ± 934 of 4 4.51Up
Mated spermatheca1516 ± 784 of 4 2.91Up
Adult carcass1381 ± 514 of 4 2.60Up
Larval CNS35 ± 34 of 4 0.07Down
Larval Salivary gland185 ± 174 of 4 0.36Down
Larval midgut843 ± 784 of 4 1.62Up
Larval tubule243 ± 124 of 4 0.50Down
Larval hindgut239 ± 164 of 4 0.46Down
Larval fat body3615 ± 5424 of 4 6.90Up
Larval trachea63 ± 124 of 4 0.12Down
Larval carcass77 ± 114 of 4 0.15Down
S2 cells (growing)115 ± 54 of 4 0.22Down
Whole fly521 ± 164 of 4

Looking for FBgn0086691. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime