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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086693 through 18771 annotations produced 1 hits



inactive (iav):

Annotation Number : CG4536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086693
Gbrowse : chrX:6708150-6712189 (+) // 100.0 //
Probeset : 1625881_at
Accessions : protein= NP_572353;, nucleotide= NM_132125;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // non-traceable author statement /// 0005216 // ion channel activity // inferred from e
FlyMine data for FBgn0086693.
Homophila reports that CG4536 is a close match (1e-19) to human gene (NP_671737), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0086693 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 1.30None
Head11 11 of 4 2.20Up
Eye3 10 of 4 0.67None
Thoracicoabdominal ganglion10 12 of 4 1.80None
Salivary gland15 50 of 4 2.91None
Crop8 10 of 4 1.50None
Midgut6 10 of 4 1.20None
Tubule8 10 of 4 1.50Up
Hindgut6 10 of 4 1.10None
Heart3 11 of 4 0.73None
Fat body5 30 of 4 1.06None
Ovary4 10 of 4 0.70None
Testis1 00 of 4 0.40None
Male accessory glands16 10 of 4 3.10Up
Virgin spermatheca6 00 of 4 1.20None
Mated spermatheca2 10 of 4 0.53None
Adult carcass9 10 of 4 1.70None
Larval CNS3 20 of 4 0.68None
Larval Salivary gland7 10 of 4 1.36None
Larval midgut3 10 of 4 0.66None
Larval tubule8 10 of 4 1.50None
Larval hindgut2 00 of 4 0.40None
Larval fat body7 20 of 4 1.40None
Larval trachea1 10 of 4 0.35None
Larval carcass2 00 of 4 0.42None
S2 cells (growing)5 11 of 4 0.96None
Whole fly5 10 of 4

Looking for FBgn0086693. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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