FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086693 through 18771 annotations produced 1 hits

inactive (iav):

Annotation Number : CG4536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086693
Gbrowse : chrX:6708150-6712189 (+) // 100.0 //
Probeset : 1625881_at
Accessions : protein= NP_572353;, nucleotide= NM_132125;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // non-traceable author statement /// 0005216 // ion channel activity // inferred from e
FlyMine data for FBgn0086693.
Homophila reports that CG4536 is a close match (1e-19) to human gene (NP_671737), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0086693 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086693 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	1 of 4	1.30	None
Head	11 ± 1	1 of 4	2.20	Up
Eye	3 ± 1	0 of 4	0.67	None
Thoracicoabdominal ganglion	10 ± 1	2 of 4	1.80	None
Salivary gland	15 ± 5	0 of 4	2.91	None
Crop	8 ± 1	0 of 4	1.50	None
Midgut	6 ± 1	0 of 4	1.20	None
Tubule	8 ± 1	0 of 4	1.50	Up
Hindgut	6 ± 1	0 of 4	1.10	None
Heart	3 ± 1	1 of 4	0.73	None
Fat body	5 ± 3	0 of 4	1.06	None
Ovary	4 ± 1	0 of 4	0.70	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	16 ± 1	0 of 4	3.10	Up
Virgin spermatheca	6 ± 0	0 of 4	1.20	None
Mated spermatheca	2 ± 1	0 of 4	0.53	None
Adult carcass	9 ± 1	0 of 4	1.70	None
Larval CNS	3 ± 2	0 of 4	0.68	None
Larval Salivary gland	7 ± 1	0 of 4	1.36	None
Larval midgut	3 ± 1	0 of 4	0.66	None
Larval tubule	8 ± 1	0 of 4	1.50	None
Larval hindgut	2 ± 0	0 of 4	0.40	None
Larval fat body	7 ± 2	0 of 4	1.40	None
Larval trachea	1 ± 1	0 of 4	0.35	None
Larval carcass	2 ± 0	0 of 4	0.42	None
S2 cells (growing)	5 ± 1	1 of 4	0.96	None
Whole fly	5 ± 1	0 of 4

Looking for FBgn0086693. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720