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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086694 through 18771 annotations produced 1 hits



lethal (3) 01640 (Bre1):

Annotation Number : CG10542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086694
Gbrowse : chr3L:5783273-5787291 (-) // 100.0 //
Probeset : 1624301_at
Accessions : protein= NP_647989;, nucleotide= NM_139732;
Pathway : engulfment // inferred from mutant phenotype /// 0007219 // Notch signaling pathway // inferred from electronic annotat
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0086694.
BioGrid reports that CG10542 interacts with CG10653 CG18734 CG9040 .
TRiP has 3 RNAi stocks for FBgn0086694 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 64 of 4 1.40Up
Head73 24 of 4 0.50Down
Eye88 34 of 4 0.63Down
Thoracicoabdominal ganglion159 34 of 4 1.10None
Salivary gland111 64 of 4 0.79None
Crop70 24 of 4 0.50Down
Midgut65 24 of 4 0.50Down
Tubule76 54 of 4 0.50Down
Hindgut62 34 of 4 0.40Down
Heart51 54 of 4 0.37Down
Fat body54 34 of 4 0.39Down
Ovary363 104 of 4 2.60Up
Testis37 14 of 4 0.30Down
Male accessory glands112 94 of 4 0.80None
Virgin spermatheca66 14 of 4 0.47Down
Mated spermatheca78 44 of 4 0.56Down
Adult carcass58 24 of 4 0.40Down
Larval CNS266 44 of 4 1.90Up
Larval Salivary gland147 24 of 4 1.05None
Larval midgut67 24 of 4 0.48Down
Larval tubule70 34 of 4 0.50Down
Larval hindgut82 04 of 4 0.58Down
Larval fat body66 34 of 4 0.50Down
Larval trachea168 64 of 4 1.20None
Larval carcass90 44 of 4 0.64Down
S2 cells (growing)188 44 of 4 1.34Up
Whole fly140 134 of 4

Looking for FBgn0086694. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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