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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0086698 through 18771 annotations produced 1 hits

fritz (frtz):

Annotation Number : CG17657
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086698
Gbrowse : chr2L:1711298-1715861 (-) // 100.0 //
Probeset : 1630378_at
Accessions : protein= NP_608614;, nucleotide= NM_134770;
FlyMine data for FBgn0086698.
VDRC has 2 RNAi stocks for FBgn0086698 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 14 of 4 0.40Down
Head64 34 of 4 0.80None
Eye38 44 of 4 0.50Down
Thoracicoabdominal ganglion34 24 of 4 0.40Down
Salivary gland120 54 of 4 1.57Up
Crop89 94 of 4 1.20None
Midgut51 44 of 4 0.70Down
Tubule80 24 of 4 1.00None
Hindgut68 24 of 4 0.90None
Heart41 14 of 4 0.54Down
Fat body60 74 of 4 0.80Down
Ovary163 24 of 4 2.10Up
Testis17 04 of 4 0.20Down
Male accessory glands53 24 of 4 0.70Down
Virgin spermatheca65 14 of 4 0.86None
Mated spermatheca68 44 of 4 0.90None
Adult carcass87 54 of 4 1.10None
Larval CNS59 64 of 4 0.77Down
Larval Salivary gland90 44 of 4 1.18None
Larval midgut52 34 of 4 0.68Down
Larval tubule56 54 of 4 0.70Down
Larval hindgut68 34 of 4 0.89None
Larval fat body54 34 of 4 0.70Down
Larval trachea55 54 of 4 0.72Down
Larval carcass52 44 of 4 0.68Down
S2 cells (growing)127 14 of 4 1.66Up
Whole fly76 44 of 4

Looking for FBgn0086698. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime