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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086704 through 18771 annotations produced 1 hits



suppressor (rdgB) 69 (stops):

Annotation Number : CG31006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086704
Gbrowse : chr3R:26983876-26994825 (-) // 100.0 //
Probeset : 1628572_s_at
Accessions : protein= NP_001163780; /// NP_733416; /// NP_733417;, nucleotide= NM_001170309; /// NM_170537; /// NM_170538;
FlyMine data for FBgn0086704.
BioGrid reports that CG31006 interacts with CG31839 CG3825 CG5804 .
VDRC has 2 RNAi stocks for FBgn0086704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 23 of 4 0.50Down
Head474 ± 104 of 410.80Up
Eye2800 ± 2214 of 464.09Up
Thoracicoabdominal ganglion15 ± 31 of 4 0.40Down
Salivary gland107 ± 154 of 4 2.47Up
Crop72 ± 54 of 4 1.60Up
Midgut18 ± 20 of 4 0.40Down
Tubule85 ± 104 of 4 1.90Up
Hindgut23 ± 22 of 4 0.50Down
Heart12 ± 30 of 4 0.29Down
Fat body12 ± 50 of 4 0.29Down
Ovary8 ± 10 of 4 0.20Down
Testis17 ± 13 of 4 0.40Down
Male accessory glands46 ± 14 of 4 1.10None
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca4 ± 00 of 4 0.11Down
Adult carcass14 ± 21 of 4 0.30Down
Larval CNS15 ± 30 of 4 0.36Down
Larval Salivary gland8 ± 20 of 4 0.19Down
Larval midgut4 ± 10 of 4 0.11Down
Larval tubule22 ± 12 of 4 0.50Down
Larval hindgut11 ± 30 of 4 0.26Down
Larval fat body15 ± 41 of 4 0.40Down
Larval trachea34 ± 641 of 4 0.79None
Larval carcass3 ± 00 of 4 0.09Down
S2 cells (growing)2 ± 00 of 4 0.05Down
Whole fly43 ± 14 of 4

Looking for FBgn0086704. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime