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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086707 through 18771 annotations produced 1 hits



nucampholin (ncm):

Annotation Number : CG12750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086707
Gbrowse : chr2L:18444506-18448996 (-) // 100.0 //
Probeset : 1628866_at
Accessions : protein= NP_609877;, nucleotide= NM_136033;
Pathway : engulfment // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation /// 001
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from sequence
FlyMine data for FBgn0086707.
BioGrid reports that CG12750 interacts with CG14053 CG4393 .
VDRC has 3 RNAi stocks for FBgn0086707 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 64 of 4 0.80Down
Head53 ± 74 of 4 0.60Down
Eye77 ± 34 of 4 0.82None
Thoracicoabdominal ganglion69 ± 24 of 4 0.70Down
Salivary gland403 ± 244 of 4 4.27Up
Crop85 ± 114 of 4 0.90None
Midgut45 ± 54 of 4 0.50Down
Tubule103 ± 114 of 4 1.10None
Hindgut103 ± 64 of 4 1.10None
Heart55 ± 44 of 4 0.59Down
Fat body58 ± 74 of 4 0.62Down
Ovary313 ± 174 of 4 3.30Up
Testis80 ± 54 of 4 0.90None
Male accessory glands820 ± 334 of 4 8.70Up
Virgin spermatheca188 ± 104 of 4 1.99Up
Mated spermatheca235 ± 194 of 4 2.49Up
Adult carcass85 ± 93 of 4 0.90None
Larval CNS291 ± 274 of 4 3.08Up
Larval Salivary gland638 ± 664 of 4 6.74Up
Larval midgut37 ± 14 of 4 0.40Down
Larval tubule85 ± 104 of 4 0.90None
Larval hindgut122 ± 124 of 4 1.30None
Larval fat body54 ± 52 of 4 0.60Down
Larval trachea192 ± 264 of 4 2.03Up
Larval carcass84 ± 44 of 4 0.89None
S2 cells (growing)210 ± 394 of 4 2.22None
Whole fly94 ± 54 of 4

Looking for FBgn0086707. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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