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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086708 through 18771 annotations produced 1 hits



starvin (stv):

Annotation Number : CG32130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086708
Gbrowse : chr3L:13470652-13476621 (+) // 100.0 //
Probeset : 1634364_s_at
Accessions : protein= NP_001097600; /// NP_729910; /// NP_729911; /// NP_729912; /// NP_729913;, nucleotide= NM_001104130; /// NM_168551; /// NM_168552; /// NM_168553; /// NM_168554;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0086708.
BioGrid reports that CG32130 interacts with CG5450 CG5680 CG4264 CG5436 CG6998 .
TRiP has 1 RNAi stocks for FBgn0086708 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain336 ± 74 of 4 2.10Up
Head326 ± 134 of 4 2.00Up
Eye386 ± 184 of 4 2.40Up
Thoracicoabdominal ganglion424 ± 94 of 4 2.60Up
Salivary gland224 ± 94 of 4 1.39None
Crop1092 ± 194 of 4 6.80Up
Midgut330 ± 294 of 4 2.00Up
Tubule558 ± 844 of 4 3.50Up
Hindgut752 ± 54 of 4 4.70Up
Heart190 ± 374 of 4 1.18None
Fat body118 ± 404 of 4 0.74None
Ovary21 ± 14 of 4 0.10Down
Testis92 ± 64 of 4 0.60Down
Male accessory glands214 ± 64 of 4 1.30None
Virgin spermatheca149 ± 54 of 4 0.93None
Mated spermatheca230 ± 104 of 4 1.43Up
Adult carcass374 ± 134 of 4 2.30Up
Larval CNS123 ± 134 of 4 0.77None
Larval Salivary gland499 ± 614 of 4 3.10Up
Larval midgut598 ± 314 of 4 3.71Up
Larval tubule163 ± 34 of 4 1.00None
Larval hindgut706 ± 254 of 4 4.38Up
Larval fat body81 ± 64 of 4 0.50Down
Larval trachea458 ± 304 of 4 2.84Up
Larval carcass880 ± 634 of 4 5.46Up
S2 cells (growing)67 ± 44 of 4 0.42Down
Whole fly161 ± 224 of 4

Looking for FBgn0086708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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