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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086710 through 18771 annotations produced 1 hits



anon-fast-evolving-1D4 (RpL30):

Annotation Number : CG10652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086710
Gbrowse : chr2L:19008270-19009235 (-) // 100.0 //
Probeset : 1634313_s_at
Accessions : protein= NP_524687; /// NP_724149;, nucleotide= NM_079948; /// NM_165271;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0086710.
BioGrid reports that CG10652 interacts with CG16890 CG32016 CG3847 CG4167 CG5930 .
VDRC has 1 RNAi stocks for FBgn0086710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1527 ± 264 of 4 0.50Down
Head3162 ± 1294 of 4 1.10None
Eye3469 ± 484 of 4 1.23Up
Thoracicoabdominal ganglion2727 ± 954 of 4 1.00None
Salivary gland3736 ± 1864 of 4 1.32Up
Crop3846 ± 1614 of 4 1.40Up
Midgut3979 ± 574 of 4 1.40Up
Tubule4386 ± 1034 of 4 1.60Up
Hindgut3454 ± 364 of 4 1.20Up
Heart4465 ± 2334 of 4 1.58Up
Fat body4448 ± 3324 of 4 1.57Up
Ovary2595 ± 594 of 4 0.90None
Testis558 ± 144 of 4 0.20Down
Male accessory glands7201 ± 2094 of 4 2.50Up
Virgin spermatheca5377 ± 2084 of 4 1.90Up
Mated spermatheca5712 ± 1324 of 4 2.02Up
Adult carcass3831 ± 1724 of 4 1.40Up
Larval CNS2408 ± 1244 of 4 0.85Down
Larval Salivary gland5983 ± 2224 of 4 2.12Up
Larval midgut2962 ± 594 of 4 1.05None
Larval tubule2968 ± 334 of 4 1.10None
Larval hindgut3455 ± 274 of 4 1.22Up
Larval fat body4872 ± 5094 of 4 1.70Up
Larval trachea4453 ± 954 of 4 1.58Up
Larval carcass3941 ± 2394 of 4 1.40Up
S2 cells (growing)3844 ± 194 of 4 1.36Up
Whole fly2824 ± 1334 of 4

Looking for FBgn0086710. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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