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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086712 through 18771 annotations produced 1 hits



Enigma (Egm):

Annotation Number : CG9006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086712
Gbrowse : chr2R:7504373-7506515 (-) // 100.0 //
Probeset : 1639259_at
Accessions : protein= NP_610687;, nucleotide= NM_136843;
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004466 // long-chain-acyl-CoA de
FlyMine data for FBgn0086712.
Homophila reports that CG9006 is a close match (2e-14) to human gene ACADSB;SBCAD (NP_001600), a gene associated with 2-methylbutyrylglycinuria, 610006 (3).
TRiP has 1 RNAi stocks for FBgn0086712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 24 of 4 1.40None
Head97 ± 44 of 4 0.90None
Eye78 ± 44 of 4 0.75None
Thoracicoabdominal ganglion149 ± 54 of 4 1.40Up
Salivary gland107 ± 44 of 4 1.03None
Crop117 ± 24 of 4 1.10None
Midgut75 ± 24 of 4 0.70None
Tubule149 ± 54 of 4 1.40Up
Hindgut134 ± 34 of 4 1.30None
Heart107 ± 64 of 4 1.03None
Fat body126 ± 154 of 4 1.21None
Ovary97 ± 04 of 4 0.90None
Testis39 ± 24 of 4 0.40Down
Male accessory glands85 ± 34 of 4 0.80None
Virgin spermatheca89 ± 24 of 4 0.86None
Mated spermatheca95 ± 64 of 4 0.91None
Adult carcass136 ± 44 of 4 1.30None
Larval CNS110 ± 74 of 4 1.06None
Larval Salivary gland112 ± 54 of 4 1.08None
Larval midgut72 ± 24 of 4 0.69None
Larval tubule58 ± 24 of 4 0.60Down
Larval hindgut157 ± 104 of 4 1.52Up
Larval fat body49 ± 34 of 4 0.50Down
Larval trachea112 ± 34 of 4 1.08None
Larval carcass89 ± 54 of 4 0.86None
S2 cells (growing)195 ± 54 of 4 1.87Up
Whole fly104 ± 104 of 4

Looking for FBgn0086712. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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