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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086757 through 18771 annotations produced 1 hits



centrosomin's beautiful sister (cbs):

Annotation Number : CG4840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086757
Gbrowse : chr2R:9338168-9340898 (+) // 100.0 //
Probeset : 1625589_at
Accessions : protein= NP_610875;, nucleotide= NM_137031;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005813 //
FlyMine data for FBgn0086757.
BioGrid reports that CG4840 interacts with Dmel CG34168 CG5053 CG6441 .
VDRC has 2 RNAi stocks for FBgn0086757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain252 ± 74 of 4 2.30Up
Head72 ± 24 of 4 0.60Down
Eye76 ± 44 of 4 0.69Down
Thoracicoabdominal ganglion258 ± 114 of 4 2.30Up
Salivary gland177 ± 34 of 4 1.59Up
Crop68 ± 24 of 4 0.60Down
Midgut32 ± 34 of 4 0.30Down
Tubule52 ± 24 of 4 0.50Down
Hindgut72 ± 14 of 4 0.70Down
Heart49 ± 14 of 4 0.44Down
Fat body63 ± 94 of 4 0.57Down
Ovary335 ± 84 of 4 3.00Up
Testis126 ± 84 of 4 1.10None
Male accessory glands106 ± 24 of 4 1.00None
Virgin spermatheca70 ± 34 of 4 0.63Down
Mated spermatheca93 ± 64 of 4 0.84None
Adult carcass57 ± 24 of 4 0.50Down
Larval CNS162 ± 124 of 4 1.47Up
Larval Salivary gland548 ± 434 of 4 4.94Up
Larval midgut35 ± 24 of 4 0.32Down
Larval tubule110 ± 64 of 4 1.00None
Larval hindgut76 ± 14 of 4 0.69Down
Larval fat body124 ± 124 of 4 1.10None
Larval trachea71 ± 34 of 4 0.65Down
Larval carcass68 ± 84 of 4 0.62Down
S2 cells (growing)91 ± 24 of 4 0.82Down
Whole fly111 ± 54 of 4

Looking for FBgn0086757. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime